Re: gfortran and ifort do not work after upgrading to Sonoma

Mon, 09 Oct 2023 08:30:10 -0700 

Hi Chris,
  I have upgraded to Xcode15, but gfortran and ifort still do not work, see below. 
 More ideal?
 Thanks
 Tao

/Users/tzhang/Disk> gfnew test.f
-macosx_version_min has been renamed to -macos_version_min
ld: warning: ignoring duplicate libraries: '-lSystem', '-lgcc', '-lgcc_ext.10.5' ld: unsupported mach-o filetype (only MH_OBJECT and MH_DYLIB can be linked) in '/usr/local/gfortran/lib/libgcc_ext.10.5.dylib' 
collect2: error: ld returned 1 exit status


/Users/tzhang/Disk> ifortnew test.f
-macosx_version_min has been renamed to -macos_version_min
ld: warning: -keep_dwarf_unwind is obsolete
ld: warning: ignoring duplicate libraries: '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libsvml.a' ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/compiler/lib/for_main.o', assuming: macOS ld: warning: no platform load command found in '/private/var/folders/p_/v0x_2lt92g107vwlf_p3kp680000gp/T/ifortSimK34.o', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[2](cvt__globals.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[3](cvt_int_to_text.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[4](cvt_data_to_text.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[5](cvt_log_to_text.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[6](cvt_text_to_int.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[7](cvt_text_to_data.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[8](cvt_text_to_log.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[9](cvt_vax_f.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[10](cvt_vax_d.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[11](cvt_vax_g.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[13](cvt_cray.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[14](cvt_ibm_short.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[15](cvt_ibm_long.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[16](cvt_ieee_double.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[17](cvt_ieee_single.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[20](cvt_cvtas_t.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[21](cvt_cvtas_s.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[22](cvt_cvtas_x.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[28](for_close.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[29](for_close_proc.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[34](for_default_io_sizes_env_init.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[36](for_desc_item.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[37](for_diags_intel.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[43](for_exit.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[44](for_exit_handler.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[48](for_fmt_comp.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[49](for_fmt_val.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[51](for_get.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[57](for_init.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[59](for_intrp_fmt.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[60](for_io_util.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[61](for_ldir_wfs.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[64](for_lub_mgt.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[65](for_need_lf.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[66](for_open.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[69](for_preconnected_units_init.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[70](for_put.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[75](for_reentrancy.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[84](for_secnds.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[85](for_stop.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[94](for_udio.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[97](for_vm.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[102](for_wseq.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[103](for_wseq_fmt.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[104](for_wseq_lis.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[142](tbk_traceback.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[145](for_aio.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[149](for_open_proc.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[150](for_aio_wrap.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[158](cvtas_globals.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[159](cvtas_pow_ten_53.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[160](cvtas_pow_ten_64.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[161](cvtas_pow_ten_128.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[162](cvtas_a_to_s.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[163](cvtas_a_to_t.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[164](cvtas_s_to_a.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[165](cvtas_t_to_a.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[166](cvtas_nan_s.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[167](cvtas_nan_t.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[168](cvtas_a_to_x.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[169](cvtas_x_to_a.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libifcoremt.a[170](cvtas_nan_x.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libimf.a[309](fetestexcept_iface_c99.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libimf.a[1225](fetestexcept.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[3](ints2q.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[4](irc_msg_support.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[7](qcomp.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[9](fp2q.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[10](q2fp.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[71](xmm_malloc.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[75](tbk_display.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[76](tbk_backtrace.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[79](cpu_feature_disp.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[82](ia32_memcmp.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[83](fast_mem_ops.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[84](fastmemcpy.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[86](fastmemset.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[99](proc_init_utils.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[102](new_proc_init.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[103](ia32_addsubq.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[105](ia32_divq.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[116](sse2_strlen.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[117](sse2_strchr.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[119](sse2_strncmp.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[122](sse2_strncat.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[125](ssse3_strcpy.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[126](ssse3_strncpy.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[158](intel_mic_avx512f_memcpy.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[159](intel_mic_avx512f_memset.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[162](intel_avx_rep_memcpy.o)', assuming: macOS ld: warning: no platform load command found in '/opt/intel/oneapi/compiler/2022.1.0/mac/bin/intel64/../../compiler/lib/libirc.a[164](intel_avx_rep_memset.o)', assuming: macOS 



On 10/9/23 3:43 AM, Chris Jones wrote:


Your system is screwed up. You must use Xcode 15 with macOS14.

Please do not mail my privately and keep your mails on the mailing list.

Chris

On 08/10/2023 10:44 pm, Tao Zhang wrote:

Hi Chris,
   gfortran and ifort  do not work after upgrading to Sonoma. see below.
   Should I upgrade to the latest Xcode15 or old Xcode14 to fix this problem? 
   It is reported that Xcode15 does not work well with Macport, right?

  Thanks
  Tao

1)
/Users/tzhang> gfnew aaa.f
sh: line 1: 12185 Bus error: 10 /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -find clang 2> /dev/null clang: error: unable to find utility "clang", not a developer tool or in PATH 

/Users/tzhang> which gfnew
gfnew:      aliased to gfortran -m64 -ffixed-line-length-0 -finit-local-zero -fbounds-check 

------------

2)
/Users/tzhang> ifortnew aaa.f
ifort: error #10106: Fatal error in xcodebuild, terminated by bus error
ifort: error #10401: error running 'xcrun -find ld'

/Users/tzhang> which ifortnew
ifortnew:      aliased to ifort -extend-source -assume byterecl




On 10/7/23 9:42 AM, Chris Jones wrote:




On 7 Oct 2023, at 4:35 pm, Tao Zhang <tzhang0...@gmail.com> wrote:

Chris,

 Thanks for your helpful suggestions.
 I will open a new ticket about installing/upgrading Macport since it is transferred from time machine.
You should always follow the migration instructions to reinstall macports when migrating to a new major OS version 

https://trac.macports.org/wiki/Migration

Using time machine to migrate macports is not a good idea.

Chris


 Thanks
 Tao


On 10/7/23 9:29 AM, Chris Jones wrote:




On 7 Oct 2023, at 4:25 pm, Tao Zhang <tzhang0...@gmail.com> wrote:

Hi Chris,
 I am using time machine to transfer them from a Mojave Macbook pro to the present Sonoma machine. 
 Is there a new version of X11 that can be installed into /usr/X11?


Not provided by macports, no.
I do not recommend what you are doing above as having anything in /usr/local is not supported by macports 

https://trac.macports.org/wiki/FAQ#usrlocal
Remove what you are putting in these locations and instead just use the macports versions 

> sudo port install grads xorg-server

Chris


 Thanks
 Tao


On 10/7/23 9:16 AM, Chris Jones wrote:

Hi,
/usr/local and /usr/X11 are not locations macports will install anything into, so you are not using a macports provided build of grads.
You should remove everything from these locations, and then install instead macports grads port. Also, in order to have a X11 server you should install macports xorg-server port. 

Chris


On 7 Oct 2023, at 4:10 pm, Tao Zhang <tzhang0...@gmail.com> wrote:

Hi,
 I have problem in X11 and grads after upgrading to  Sonoma. I am using intel i9 chip. 

 see below.

 Do you know how to fix it?

 Thanks

Tao


“XQuartz” is damaged and can’t be opened.

MacBook-Pro-2018:~ 33;grads
dyld[6709]: Library not loaded: /usr/X11/lib/libX11.6.dylib
  Referenced from: <D78EE29B-2C05-333A-9BCA-438045C5F6EA> /usr/local/bin/grads   Reason: tried: '/usr/X11/lib/libX11.6.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/X11/lib/libX11.6.dylib' (no such file), '/usr/X11/lib/libX11.6.dylib' (no such file), '/usr/local/lib/libX11.6.dylib' (no such file), '/usr/lib/libX11.6.dylib' (no such file, not in dyld cache) 
Abort

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