Megan,
I am not yet running Sierra. Unless the scheme changed in the latest Fusion, you can remap the NVDA key in VMware Fusion settings. I remapped to the accent key which is above the capslock key.

From E.T.'s Keyboard...
  Are We Alone in the Universe?
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On 9/24/2016 10:34 AM, Megan Bening wrote:
Hello all,
I did a stupid thing and upgraded to Sierra without properly checking to
see whether *everything* worked. I guess it never occurred to me that
karabiner and Seil would be the things that would break, but there ya
go. Ergo, functionally my virtual machines are broken, since now I can't
use the Mac's keyboard to interact with JAWS or NVDA, since my caps
remapping is gone. I also used Karabiner to remap my mechanical keyboard
at work in some very specific ways, since it's a very strange little
keyboard and the layout was just very fiddly, so that's not much fun
either. But the upshot is, has anyone found another solution that works
for remapping? Ideally, something that still allows me to remap caps
lock, since I still actually use some of the other commonly remapped
keys like the tilde key, etc. I know I can't be the only person who
relies heavily on VMWare and Windows along with Sierra, and someone else
must be looking for a solution as well.
thanks for any advice!
Megan

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