I find that my usage is tag dependent. In general I want markdown: <html> on <head> off <body> on <div> on <table> on <code> off <pre> off
The various table MD extensions mean that I almost never use a table tag anymore. My div tags allow me to unobtrusively put some page structure with css classes into my documents. My average page has about 10 structural divs in it. It's a nuisance and an eyesore to turn on markdown in each one.
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