Dear all,
Apologies for cross-posting.
We are pleased to announce our recent publication in the ESA Journal Ecosphere:
Boys, R.M., Oliveira, C., 
Pérez‐Jorge<https://esajournals.onlinelibrary.wiley.com/action/doSearch?ContribAuthorStored=P%C3%A9rez-Jorge%2C+Sergi>,
 S., Prieto, R., Steiner, L. And Silva, M.A. (2019) Multi‐state open robust 
design applied to opportunistic data reveals dynamics of wide‐ranging taxa: the 
sperm whale case. Ecosphere

Abstract:

Capture–mark–recapture methods have been extensively used to estimate 
abundance, demography, and life history parameters of populations of several 
taxa. However, the high mobility of many species means that dedicated surveys 
are logistically complicated and expensive. Use of opportunistic data may be an 
alternative, if modeling takes into account the inevitable heterogeneity in 
capture probability from imperfect detection and incomplete sampling, which can 
produce significant bias in parameter estimates. Here, we compare 
covariate‐based open Jolly‐Seber models (POPAN) and multi‐state open robust 
design (MSORD) models to estimate demographic parameters of the sperm whale 
population summering in the Azores, from photo‐identification data collected 
opportunistically by whale‐watching operators and researchers. The structure of 
the MSORD also allows for extra information to be obtained, estimating 
temporary emigration and improving precision of estimated parameters. Estimates 
of survival from both POPAN and MSORD were high, constant, and very similar. 
The POPAN model, which partially accounted for heterogeneity in capture 
probabilities, estimated an unbiased super‐population of ~1470 whales, with 
annual abundance showing a positive trend from 351 individuals (95% CI: 
234–526) in 2010 to 718 (95% CI: 477–1082) in 2015. In contrast, estimates of 
abundance from MSORD models that explicitly incorporated imperfect detection 
due to temporary emigration were less biased, more precise, and showed no trend 
over years, from 275 individuals (95% CI: 188–404) in 2014 to 367 (95% CI: 
248–542) in 2012. The MSORD estimated short residence time and an even‐flow 
temporary emigration, meaning that the probability of whales emigrating from 
and immigrating to the area was equal. Our results illustrate how failure to 
account for transience and temporary emigration can lead to biased estimates 
and trends in abundance, compromising our ability to detect true population 
changes. MSORD models should improve inferences of population dynamics, 
especially when capture probability is low and highly variable, due to 
wide‐ranging behavior of individuals or to non‐standardized sampling. 
Therefore, these models should provide less biased estimates and more accurate 
assessments of uncertainty that can inform management and conservation measures.

The paper is open access and is available for download here:
https://esajournals.onlinelibrary.wiley.com/doi/full/10.1002/ecs2.2610

For any questions please feel free to email me.

Kind regards,

Rebecca Boys
-------------------------------------------------------------
Rebecca M Boys

Marine Biologist
PhD Candidate
Coastal Marine Research Group
Massey University New Zealand
https://www.coastalmarineresearchgroup.com/
@RebeccaMBoys
European Cetacean Society Student Representative
Society of Marine Mammalogy Education sub-committee member

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