On Thu, 20 Jul 2006, Alexandre Gattiker wrote: > Damian Smedley wrote: > > On Thu, 20 Jul 2006, Alexandre Gattiker wrote: > > > >> Hello, > >> > >> If a mart database accidentally contains two __main tables for the same > >> dataset, marteditor in "Naive" mode hangs in the following loop at > >> DatabaseDatasetConfigUtils.java line 3342. > > > > do you mean two tables with exactly the same name? All our ensembl > > datasets have two __main tables per dataset so that shouldn't be a > > problem. What are the names of your main tables out of interest - we will > > investigate > > my tables were named something like: > > Scerevisiae__aaa__main > Scerevisiae__bbb__main > > According to the doc the part in the middle is irrelevant, and there > should only be one __main table with a given prefix part, if I > understand correctly.
guess our docs are a bit misleading on this - we will improve it for the 0_5 release :) Your table names should be fine (eg) in hsapiens_gene_ensembl we have: hsapiens_gene_ensembl__gene__main with gene_id_key hsapiens_gene_ensembl__transcript__main with gene_id_key, transcript_id_key suspect it is the combination of your main tables and keys that is causing the hang rather than the table names - what are your keys? cheers Damian > > Cheers > Alexandre > > > -- > Alexandre Gattiker > Swiss Institute of Bioinformatics, Genome Bioinformatics Group > Biozentrum Tel. +41 61 267 1579 > Klingelbergstrasse 50 Fax +41 61 267 1585 > 4056 Basel [EMAIL PROTECTED] > Switzerland http://www.biozentrum.unibas.ch/primig >
