On 7 Nov 2006, at 15:37, Vallejos, Andrew wrote:
<virtualSchema name = "orginal data">
<MartDBLocation
name = "ipi_rat__1"
displayName = "IPI Mart"
databaseType = "mysql"
host = ""
port = ""
database = "ipi_rat__mart__1"
schema = "ipi_rat__mart__1"
user = ""
password = ""
visible = "1"
default = ""
includeDatasets = "ipi_rat"
martUser = ""
/>
</virtualSchema>
I am trying to set up a virtual schema. Above is the section of the
Mart Registry XML file for the virtual schema. I have removed the
host,
port, user, and password for security, but they are all properly filled
out.
The issue is I cannot select the database from the BioMart. When I
select the schema "original data" both the database and dataset
dropdown
lists become empty. This is despite the fact that BioMart reports as
having successfully loaded the database when I restart the server.
Any ideas?
Thanks,
Andrew
Hi Andrew,
try to remove spaces from your schema name ei replace it with
'original_data'.
For display purposes you can use 'displayName'
a.
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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