On 14 Dec 2006, at 13:23, David Withers wrote:
When I submit the query:
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Query>
<Query virtualSchemaName="default" count="0" softwareVersion="0.5">
<Dataset name="rnorvegicus_gene_ensembl">
<Attribute name="gene_stable_id" />
<Attribute name="coding_gene_flank" />
<Filter name="ensembl_gene_id" value="ENSRNOG00000028302" />
<Filter name="upstream_flank" value="100" />
</Dataset>
</Query>
I get the error: 'Query ERROR: caught BioMart::Exception::Usage: Filter
upstream_flank NOT FOUND'
How should I specify the upstream_flank filter?
Hi David,
the query looks correct to me so this is likely to be a bug on our side.
We'll look into this and get back to you
a.
David
--
David Withers
School of Computer Science, University of Manchester,
Oxford Road, Manchester, M13 9PL, UK.
Tel: +44(0)161 275 0145
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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