On 21 Dec 2006, at 13:59, Arek Kasprzyk wrote:
[NEW CONFIGURATION] .... WITH MEMORY [default]
default ... Reagent Tracker .......... 001/001 ... reagents_tbl
.............................. (RDBMS) localhost:5432
................ OK
Setting possible links between datasets
....(scanning) 100%
....(linking) 100%
....(sorting) 100%
....(clustering) 1/1 - 0 remain
....(resolving) 100%
Building templates for visible datasets
Uh-oh, got some non-fatal warnings:
Use of uninitialized value in print at
/home/olhovsky/biomart-perl/bin/configureBioMart.pl line 353.
and the last thing, I am assuming that this is the last line of the
output you see or does it actually
go to the next step - 'Compiling templates for visible datasets'?
a.
Hi Marina,
yes this looks a bit weird. Your xml is pulled out ok but then it dies
on templates.
There is nothing that immidiately strikes me as being a possible
problem
Is there a chance that you could send us (off the list) your xml so we
could investigate
a bit here?
(you need to use MEditor, connect to your mart and 'save all' to the
file) and please
send us this file (probably tar.gz)
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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