Hi,
I've now got all of my own datasets talking to each other nicely via
exportables and importables. Thet can also comminicate with
ENSEMBL, Uniprot and MSD using the same technology, which
is extremely cool.
I'm having trouble connecting to Wormbase though. I tried to connect
to their gene dataset via an exportable with a link name "celegans_gene_id",
which corresponds to an importable with the same link name in
Wormbase. There's no link version at either end of the link. MartEditor
is quite happy with the new exportable.
However, when I run configure.pl, I get:
ERROR something wrong with your registry: Can not add link
'celegans_gene_id', exportable 'celegans_gene_id' not found in source
dataset: test_reactome_18_pathway
Trace begun at
/scratch/croft/Reactome/BioMart0.5/biomart-perl/bin/../lib/BioMart/Links.pm
line 323
BioMart::Links::addLink('BioMart::Links=HASH(0xab10c1c)', 'default',
'celegans_gene_id')
I think Wormbase may be running under Mart 0.4 - could this cause
problems with linking?
Cheers,
David.
