On 8 Mar 2007, at 17:53, seth redmond wrote:
getting an odd error on one of my marts. I have a filter on one
dataset, and I use pointer filters to provide the same filters on
another DB. When I use these filters directly everything is fine, but
using them via the pointer_features I get a "problematic query" error.
Any ideas?
Hi Seth,
are the pointers you referring to pointing to visible datasets? is
there more than one such pointer involved in your query?
a.
-s
Stacktrace is as follows:
2007/03/08 17:39:07 martview:967:ERROR>30160 ERROR: caught
BioMart::Exception::Query: Problematic Query, unable to determine
finite path through Datasets
Stacktrace:
Exception::Class::Base::throw
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
648
BioMart::QueryRunner::_executionPlan
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
715
BioMart::QueryRunner::_executionPlan
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
715
BioMart::QueryRunner::_executionPlan
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
621
BioMart::QueryRunner::executionPlan
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
156
BioMart::QueryRunner::execute
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/Web.pm:1847
(eval)
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/Web.pm:1647
BioMart::Web::handle_request
/home/snr02/work/biomart/0.5/biomart-perl/cgi-bin/martview:84
(eval)
/home/snr02/work/biomart/0.5/biomart-perl/cgi-bin/martview:83
ModPerl::ROOT::ModPerl::Registry::
home_snr02_work_biomart_0_2e5_biomart_2dperl_cgi_2dbin_martview::
handler
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/RegistryCooker.pm:203
(eval)
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/RegistryCooker.pm:203
ModPerl::RegistryCooker::run
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/RegistryCooker.pm:169
ModPerl::RegistryCooker::default_handler
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/Registry.pm:30
ModPerl::Registry::handler -e:0
(eval) -e:0
ERROR: caught BioMart::Exception::Query: Problematic Query, unable to
determine finite path through Datasets
Stacktrace:
Exception::Class::Base::throw
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
648
BioMart::QueryRunner::_executionPlan
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
715
BioMart::QueryRunner::_executionPlan
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
715
BioMart::QueryRunner::_executionPlan
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
621
BioMart::QueryRunner::executionPlan
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
156
BioMart::QueryRunner::execute
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/Web.pm:1847
(eval)
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/Web.pm:1647
BioMart::Web::handle_request
/home/snr02/work/biomart/0.5/biomart-perl/cgi-bin/martview:84
(eval)
/home/snr02/work/biomart/0.5/biomart-perl/cgi-bin/martview:83
ModPerl::ROOT::ModPerl::Registry::
home_snr02_work_biomart_0_2e5_biomart_2dperl_cgi_2dbin_martview::
handler
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/RegistryCooker.pm:203
(eval)
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/RegistryCooker.pm:203
ModPerl::RegistryCooker::run
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/RegistryCooker.pm:169
ModPerl::RegistryCooker::default_handler
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/Registry.pm:30
ModPerl::Registry::handler -e:0
(eval) -e:0
--
Seth Redmond
Scientific Programmer, VectorBase
Kafatos / Christophides Groups
Div. Cell and Molecular Biology
Imperial College, London
[EMAIL PROTECTED]
--
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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