Hi,
MCW/RGD marts are available at biomart.mcw.edu
(also accessible through central server MView and MService)
a.
Begin forwarded message:
From: Twigger Simon <[EMAIL PROTECTED]>
Date: 21 April 2007 04:16:54 BST
To: Arek Kasprzyk <[EMAIL PROTECTED]>
Subject: Re: [mart-dev] publicly available sites running BioMart?
Hi Arek,
The biomart is now live here: biomart.mcw.edu
This is being developed by the MCW proteomics center in collaboration
with RGD. For now we have RGD Genes and RGD Microsatellite data
available, the IPI Rat and IPI Unigene will be along shortly. I look
forward to seeing the info on 0.6
Cheers,
Simon.
--
Simon N. Twigger, Ph.D.
Assistant Professor, Department of Physiology
Medical College of Wisconsin
8701 Watertown Plank Road,
Milwaukee, WI, USA
tel: 414-456-8802
fax: 414-456-6595
AIM/iChat: simontatmcw
On Apr 3, 2007, at 4:41 AM, Arek Kasprzyk wrote:
On 2 Apr 2007, at 21:24, Twigger Simon wrote:
Hi Arek,
Just to keep you in the loop - we're hoping to get our Biomart fully
public this week. Its actually online already (biomart.mcw.edu) but
not quite ready for primetime so hold off from announcing it to the
world until I give you the go ahead. We're running 0.4 at the moment
because we had all our stuff built on 0.4 before 0.5 emerged and I
find the user interface of 0.4 a little more intuitive for users -
it leads them through the various steps better than 0.5's ajax
interface. I think in due course we'll upgrade but for now we're
going with 0.4 for the first release.
sure, makes sense to me. just give me a shout when you are ready and
we can discuss the details :)
We'll be putting out some other biomarts in the coming weeks once
our original two RGD datasets go out - rat IPI and Rat unigene.
excellent
These are handy for us to have a cross reference datasets for
different IDs that people may want to use to query RGD. Do you know
how progress is going on a Uniprot Biomart? Having their data up to
date in Biomart would be really useful...
I don't think any work has been done there yet. I can give you a
contact person name so you can enquire
thanks for letting me know,
a.
Best,
Simon.
--
Simon N. Twigger, Ph.D.
Assistant Professor, Department of Physiology
Medical College of Wisconsin
8701 Watertown Plank Road,
Milwaukee, WI, USA
tel: 414-456-8802
fax: 414-456-6595
AIM/iChat: simontatmcw
On Apr 2, 2007, at 9:56 AM, Arek Kasprzyk wrote:
Hello everyone,
this is a request to people running publicly available sites
using BioMart software. We would be very happy
to provide various pointers to you from www.biomart.org.
BioMart central server not only provides hyperlinks
to various projects using BioMart but also serves as a web service
registry for
various third party software such Bioconductor biomaRt
annotation package,Taverna workflow system etc.
In this way you can make your data available to a broader user
community. If you do run such site and you are happy with the idea
please do drop us an email.
thank you,
a.
--------------------------------------------------------------------
-----------
Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
--------------------------------------------------------------------
-----------
----------------------------------------------------------------------
---------
Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
----------------------------------------------------------------------
---------
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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