Warning: this query would return ~665MB of data :)
But I just wanted the peptide alignments, not 665 MB of strange nucleotides... :-) Well I think there is a problem with the martview output. Compare it with the website martivew output (compara homology, human, ciona, orthologs, features=alignments, no filter): The output should be 15 MB and not genomic sequence... or maybe there is something else that I don't know about the XML-parameters... Is there a way to do this with martshell? cheers, Max
