Hi Jay, It seems only RefSeq Peptide IDs are available for drosophila this release of mart and I am presuming you want the RefSeq DNA IDs. I just checked our database and indeed these mapping are missing. We get these mappings direct from the core ensembl dbs and for this release these mappings were not there for drosophila. I am cc'ing ensembl-dev as someone there should have the reason for their absence
hopefully they will be back next release Best wishes Damian On Fri, 11 May 2007, Benoit Ballester wrote: > Jay, > > I am forwarding your question to the mailing list mart-dev. Please send > commnents/questions to this list, you'll receive more answers. > > I suppose you are talking about "Refseq IDs", which are available in the > Feature attribute, in the GENE panel, and is named "Refseq peptide ID"... > > Unless you want regulatory features, which I don't think is in a mart yet. > > Benoit > > > -------- Original Message -------- > Subject: NMXXXX for drosophila > Date: Thu, 10 May 2007 16:47:00 -0700 (PDT) > From: Jay an <[EMAIL PROTECTED]> > To: Benoit Ballester <[EMAIL PROTECTED]> > > > > thanks, > > another question, how can I get regSeq ID for drosophila? > I could not find it in Attribute (Features). > > > > > */Benoit Ballester <[EMAIL PROTECTED]>/* wrote: > > Jay, > > In addition to Syed's email, if you need more help, you can have a look > at some PDF tutorials at: > > http://www.ensembl.org/info/helpdesk/tutorials/index.html > under the Biomart section, > > and also have a look at some video tutorials at : > http://www.ensembl.org/common/Workshops_Online > > - Biomart: Introduction > - BioMart: Homology (Basic) > - BioMart: Homology (Advanced) > - BioMart: Variations-dbSNP > - BioMart: Variations for a gene > > > Hope this helps, > > Benoit > > Syed Haider wrote: > > Hi Jay > > - visit www.biomart.org/biomart/martview > > - Select dataset Mus musculus genes (NCBIM36) > > - Hi Dataset link from left panel and choose Sequence Option from > right > > hand side panel. > > - Hit Attributes (left panel), Select the Sequence type cDNA from > right > > hand side panel. > > - Hit Results > > - Choose Options (Compressed Web File (notify by email)) > > - Hit Go. > > > > Good luck! > > > > Cheers > > Syed > > > > > > On Thu, 2007-05-10 at 05:20 -0700, Jay an wrote: > >> genome > > -- > Benoit Ballester, PhD > Ensembl Team > European Bioinformatics Institute (EMBL-EBI) > Wellcome Trust Genome Campus, Hinxton > Cambridge CB10 1SD, United Kingdom > > > ------------------------------------------------------------------------ > Never miss an email again! > Yahoo! Toolbar > <http://us.rd.yahoo.com/evt=49938/*http://tools.search.yahoo.com/toolbar/features/mail/> > > > alerts you the instant new Mail arrives. Check it out. < > http://us.rd.yahoo.com/evt=49937/*http://tools.search.yahoo.com/toolbar/features/mail/> > > > > > -- > Benoit Ballester, PhD > Ensembl Team > European Bioinformatics Institute (EMBL-EBI) > Wellcome Trust Genome Campus, Hinxton > Cambridge CB10 1SD, United Kingdom >
