-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Hello. This happens when multiple marts contain dataset with the same names.

You need to do what the error message says and regroup marts with
conflicting datasets into separate virtual schema tags. Then, you need
to insert the appropriate virtual schema name into the martservice
requests. Your example URL then becomes:

http://www.biomart.org/biomart/martservice?type=attributes&virtualschema=default&dataset=gaculeatus_gene_ensembl

cheers,
Richard

Matteo Floris wrote:
> Dear developers,
> 
> sorry for the growing list of bug reports, but we are testing our
> interface to BioMart :)
> 
> We try to install a local martservice, but we get this error:
> 
> ERROR something wrong with your registry:
>               Dataset 'gaculeatus_gene_ensembl' is duplicated in
> virtualSchema 'BioMart::Configuration::VirtualSchema=HASH(0xa6ea388)->name'
>               Please rename datasets in meta_conf tables or separate
> conflicting datasets
>               into different virtual schemas in defaultMartRegistry.xml
> etc...
> 
> indeed, the url
> 
> http://www.biomart.org/biomart/martservice?type=attributes&dataset=gaculeatus_gene_ensembl
> <http://www.biomart.org/biomart/martservice?type=attributes&dataset=gaculeatus_gene_ensembl>
> 
> says:
> 
> "Dataset name conflict for gaculeatus_gene_ensembl. Need to further
> qualify with the virtualSchemaName as well"
> 
> 
> 
> Hope this helps.
> 
> 
> Cheers,
> 
> 
> Matteo.
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.2.2 (GNU/Linux)
Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org

iD8DBQFGpgjm4C5LeMEKA/QRAkTzAJ4ksYjMc+I0xf1n0A/DPVaqBk2S1wCfZfSF
+cCDYMyzVHf40b3r4eqAZ/M=
=ATht
-----END PGP SIGNATURE-----

Reply via email to