-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Sorry but I'm not sure I understand your question fully. Are you asking us how to restrict the list of species available, or how to add to it? What is the problem in HTML/JavaScript that you refer to?
The list of second species and types is restricted to only those combinations that have corresponding datasets in the homology mart tables. If you can't find a particular combination, then it is because there is no dataset for that combination. (The vertical bar separation is unique to Compara mart and is not intended for use in other marts - it's a temporary solution whilst we think of a better way of doing things.) cheers, Richard Gianfranco Frau wrote: > > I'm a little confused by the behavior of martivew on > http://www.biomart.org/biomart/martview/ > > You know (please correct me if it's wrong) that each database is linked > to a series of datasets by the mart file that you can download using url > like: > http://www.biomart.org/biomart/martservice?type=datasets&mart=ensembl > <http://www.biomart.org/biomart/martservice?type=datasets&mart=ensembl> > > On martview, for the first database listed (ENSEBL 45 GENES - SANGER) > you can choose on a list of simple datasets. > However If you choose ENSEMBL 45 HOMOLOGY - SANGER, datasets are divided > into species and type. > If we look the mart file, you can find CSV lines, like: > > TableSet compara_agam_agam_paralogs Anopheles gambiae > (AgamP3)|Anopheles gambiae (AgamP3)|Paralogues TableSet > compara_agam_btau_orthologs Anopheles gambiae (AgamP3)|Bos taurus > (Btau_3.1)|Orthologues 1 TableSet > compara_agam_btau_paralogs Anopheles gambiae (AgamP3)|Bos taurus > (Btau_3.1)|Paralogues 1 > A dataset is indicated by the unique internal name (after Tableset). The > third CSV element is the Display name for selections, and (I suppose) > species and type are separated by a "|" char. > > The question is: > > Is normal that after I select "Anopheles gambiae" as first specie in the > website, I can choose for example XENOPUS TROPICALIS as second, instead > only Anopheles gambiae or bos taurus, how I may expect looking the mart > file? > Is there a problem with html and javascript or I miss something? > > thank you > > Gianfranco > > -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.2.2 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFGuCTK4C5LeMEKA/QRAgMPAJ9gBOtP0/LuYaol/rErKHsj2oAiwACcDU06 82vtphdekH3sF3O060BiiR4= =fZdn -----END PGP SIGNATURE-----
