On Wed, 2007-09-12 at 08:43 -0500, Vallejos, Andrew wrote: > perl bin/configure.pl --clean -r con/your_registry.xml --clean > > is the exact syntax that I use. Does it matter than the '--clean' is in > a different location?
no, as long as its there, its fine. did you try removing existing filter and adding a new one ? cheers syed > > -Andrew > > > -----Original Message----- > From: Syed Haider [mailto:[EMAIL PROTECTED] > Sent: Wednesday, September 12, 2007 4:57 AM > To: Vallejos, Andrew; mart-dev > Subject: RE: [mart-dev] Duplicate Entry Error > > Hi Andrew > Could you please confirm if once doing the 'export' from MartEditor, you > do reconfigure BioMart > > perl bin/configure.pl -r con/your_registry.xml --clean > > and kill/restart your server ? > > If so, then i would suggest to delete the existing filter which is > causing you the trouble and redeclare it. hopefully that will work out. > > cheers > syed > > > On Tue, 2007-09-11 at 13:52 -0500, Vallejos, Andrew wrote: > > Syed, > > > > Ok, so I am not getting the duplication error anymore. However, I > have > > filters that are not showing up. > > > > The chromosome filter for gene map v3.4 and the disease ontology > filters > > are not displaying on martview page. The chromosome I did get to > > display once, but then it disappeared the next time I updated the > file. > > > > -Andrew > > > > -----Original Message----- > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > Sent: Friday, September 07, 2007 3:34 AM > > To: Vallejos, Andrew > > Cc: [email protected] > > Subject: Re: [mart-dev] Duplicate Entry Error > > > > Hi Andrew > > > > On Thu, 2007-09-06 at 15:44 -0500, Vallejos, Andrew wrote: > > > We've recently installed a test v0.6 mart. However, now that I am > > > using the v0.6 tools I keep receiving a "Remove Duplicates before > > > generating Template" error. > > > > is it martEditor which throws this error ? If so, please send me your > > xmls. I assume you get this error when you 'export'. Please correct me > > if thats not the case. > > > > thanks > > syed > > > > > > > > > > > > > > > > I have no idea why I am getting this error as I have no duplicates > in > > > my attribute tables, I've checked. > > > > > > > > > > > > -Andrew > > > > > > > > > > > > ====================== > > > > > > Andrew Vallejos > > > > > > Web Developer > > > > > > Medical College of Wisconsin > > > > > > 414-955-4104 > > > > > > [EMAIL PROTECTED] > > > > > > > > > > > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
