Dear Wick, Each time you run configure.pl, it assumes that configuration has been revised, so generates a new httpd.conf. user directive varies from machine to machine depending how/who ran the apache server, few permutations with apache versions, and it may not be required in certain cases. So, we dont add it by default. If you have to run configure several times to see how your mart looks like following changes in DB or MartEditor exports, I would suggest you to add it to
biomart-perl/bin/ConfBuilder.pm file, stick it with other apache directives and it will never bother you again :) Hope this helps. Feel free to write if need further help. cheers syed On Fri, 2007-12-21 at 12:55 -0800, WICK GANKANDA wrote: > Dear Syed Haider, > > I am a developer working for Caltech's Computational Regulatory > Genomics center. > We are trying to use BioMart for the sea urchin genome and would > appreciate your help. > > Since I am new to BioMart and its configurations, pardon the lack of > formal details... > > Previously, I added "User apache" to at the top > of /usr/biomart-perl/conf/httpd.conf. The server started fine. > Now the line "User apache" is gone from that file. > How can I get the line "User apache" to stay at the top of httpd.conf > file? > > As prev asked, why isn't the configure script adding this? > I don't see any user-setting in the file conf/settings.conf > > This is in reference to the mart-dev forum at > http://www.mail-archive.com/[email protected]/msg00975.html > > Thank you. > > Wick Gankanda > California Institute of Technology > Bioinformatics Software Developer > Center for Computational Regulatory Genomics >
