Hi, I use the XML query below to get SNP information from a section of the chromosome. This query is not working in the latest release of BioMart - I get the repsonse Usage: Filter chrom_start NOT FOUND from the server.
I had a look at the filter names using: http://www.biomart.org/biomart/martservice/martservice?type=filters&data set=hsapiens_snp But there does not seem to be any comparable filter for chrom_start I can use. Does anyone know what I should be using? Best regards, Ed <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE Query> <Query formatter="CSV" virtualSchemaName = "default" Header = "1" count = "" datasetConfigVersion = "0.6" > <Dataset name = "hsapiens_snp" interface = "default" > <Attribute name = "refsnp_id" /> <Attribute name = "chr_name" /> <Attribute name = "chrom_start" /> <Attribute name = "chrom_end" /> <Attribute name = "chrom_strand" /> <Attribute name = "allele" /> <Attribute name = "validated" /> <Filter name = "chr_name" value = "$1"/> <Filter name = "chrom_start" value = "$2"/> <Filter name = "chrom_end" value = "$3"/> </Dataset> </Query> ##################################################################################### This e-mail message has been scanned for Viruses and Content and cleared by MailMarshal #####################################################################################
