On 28/07/08 3:59 AM, "Xose M Fernandez" <[EMAIL PROTECTED]> wrote:
> Arek,
> If people want to contact Ensembl helpdesk, then the eMail address is
> [EMAIL PROTECTED]
> Xose
Yes, sorry about this mistake.
thanks Xose :)
A.
>
> Arek Kasprzyk wrote:
>> Hi,
>> Ensembl mart has moved to automatic mart builds from release 50 and as a
>> result there have been some changes to the existing attributes and filters.
>> The complete list is below. Please adjust your scripts and workflows
>> accordingly. The test server is provided for your convenience at
>> test.biomart.org.
>>
>>
>> I am sending this email on behalf of Ensembl team for the last time as
>> biomart team is no longer directly involved in the Ensembl mart production
>> and Ensembl team has now taken over. Please contact Ensembl team directly at
>> [EMAIL PROTECTED] if you require any help or info.
>>
>> The ETA for Central Portal update to Ensembl 50 is mid next week.
>> A.
>>
>>
>>
>>
>>
>> < means GONE
>>> means REPLACEMENT
>>
>> --------
>> Attributes
>> --------
>>
>> < 3utr_end
>> < 3utr_start
>> < 5utr_end
>> < 5utr_start
>> < cdna_length
>> < cds_length
>> < constitutive
>> < gene_chrom_end
>>> end_position
>> < gene_chrom_start
>>> start_position
>> < gene_stable_id
>>> ensembl_gene_id
>> < ensembl_cdna_length
>> < ensembl_cds_length
>> < ensembl_peptide_length
>> < exon_cdna_end
>> < exon_cdna_start
>> < exon_cds_end
>> < exon_cds_start
>> < exon_chrom_strand
>>> strand
>> < exon_coding_end
>> < exon_coding_start
>> < exon_stable_id
>>> ensembl_exon_id
>> < external_db_name
>> < family
>> < family_description
>> < feat_chr_end
>> < feat_chr_name
>> < feat_chr_start
>> < feature_set
>> < feature_type
>> < feature_value
>> < str_chrom_name
>>> chromosome_name
>> < struct_biotype
>>> biotype
>> < struct_description
>>> description
>> < struct_external_gene_id
>> < struct_family
>> < struct_transcript_count
>>> transcript_count
>> < transcript_chrom_end
>> < transcript_chrom_start
>> < transcript_chrom_strand
>> < transcript_display_id
>> < transcript_stable_id
>>> ensembl_transcript_id
>> < translation_stable_id
>>> ensembl_peptide_id
>> < type
>> < unified_uniprot
>> < unified_uniprot_accession
>> < uniprot_varsplic_id
>> < evidence_code
>> < go
>>> go_biological_process_id
>>> go_cellular_component_id
>>> go_molecular_function_id
>> < go_description
>>> go_bilogical_process_linkage_type
>>> go_cellular_component_linkage_type
>>> go_molecular_functions_linkage_type
>> < *species*_external_db
>> < *species*_external_id
>> < *species*_dn_ds
>>
>> -------------
>> FILTERS
>> -------------
>> < with_3utr
>> < with_5utr
>> < biol_process
>>> go_biol_process_filters
>> < cell_component
>>> go_cell_location_filters (fix this name in 51)
>> < evidence_code
>>> go_mol_function_filters
>> < evidence_code_biol_process
>>> go_biol_process_evidence_code
>> < evidence_code_cell_component
>>> go_cell_location_evidence_code (fix this name in 51)
>> < constitutive
>>
>>
>>
>>
>
> --
> Xose M. Fernandez
> EMBL-European Bioinformatics Institute
> Wellcome Trust Genome Campus,
> Hinxton, Cambridge, CB10 1SD
> Great Britain
