I guess the mod_perl installation is ok, i just checked the httpd.conf and error_log.
cheers syed On Fri, 2008-10-10 at 10:48 -0400, Jianxin Wang wrote: > Hi Liisa, > > > > For your first question, when you save configuration by doing an > export, nothing visible should happen. The settings are written to > meta-tables in your database. > > > > For your second question, I suspect that your mod_perl installation > maybe brocken. Try to reinstall it according to the documentation. > > > > Jason > > > > > ______________________________________________________________________ > From:[EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On > Behalf Of Liisa Koski > Sent: Friday, October 10, 2008 10:17 AM > To: [email protected] > Subject: [mart-dev] Problems starting Mart View > > > > > > Hi, > I have used MartBuilder and MartEditor to build and configure a mart. > I have two questions. > 1. When I choose Export from the MartEditor File menu to save the > configuration nothing happens. Is the configuration saved somewhere > automatically or should I be asked where? > > 2. I created myRegistry.xml in the biomart-perl/conf directory and ran > perl bin/configure.pl -r conf/myRegistry.xml. I am not asked any > questions at this step and the output looks like > > Got usable Apache in /usr/local/apache-2.2.8/bin/httpd, probing for > version & ModPerl configuration > Have Apache DSO-support and ModPerl library file present, configuring > ModPerl in httpd.conf. > Libdir /usr/local/biomart-perl/lib is not in @INC, adding to @INC > > > > Connection parameters of [test_maize_mart] [ OK ] > > > [NEW CONFIGURATION] .... WITH MEMORY [default] > default ... test_maize_mart .......... 001/001 ... > gene_stable_id ............................ (RDBMS) > localhost:3306 ................ OK > Setting possible links between datasets > ....(scanning) 100% > ....(linking) 100% > ....(sorting) 100% > ....(clustering) 1/1 - 0 remain > ....(resolving) 100% > Building templates for visible datasets > .... 100% > Compiling templates for visible datasets > [1/1] Attribute Panel of Dataset.. :gene_stable_id > [1/1] Filter Panel of Dataset..... :gene_stable_id > > > I start MartView by typing /usr/bin/httpd -d $PWD > > In the web browser I can type http://localhost:port and see the > BioMart Project Page but if I add /biomart/martview I get a 500 > Internal Server Error. > > > Thanks in advance for your help, > > Liisa > > > > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
