Hi all, I just wanted to add that when using soapUI (http://www.soapui.org, and there's a java web start from the bottom of the main page) I can run getRegistry() and get a sensible result. So, can anyone hazard a guess why it's not working through the java client?
thanks! 2009/1/9 Allyson Lister <[email protected]> > Hi all, > > Progressing from my previous emails about the XSD setup, I've downloaded > the wsdl and xsd, made the small changes to the xsd to get it to work > (modified the name of filter/dataset/attribute) and then tried to connect > with a really basic Java client. I'm getting the error shown at the bottom > of the email. It seems that it cannot connect to the service. The wsdl and > xsd are completely standard so I don't need to attach them here, but I am > connecting via cxf with the attached test class, which is what fails at line > 33 when you read the error messsage below. > > Can anyone help me with why this isn't connecting? Btw, if I switch the > URLs in the wsdl and xsd to be my local biomart installation, I get the > exact same error. > > thanks very much! :) > > log4j:WARN No appenders could be found for logger > (org.apache.cxf.bus.spring.BusApplicationContext). > log4j:WARN Please initialize the log4j system properly. > 09-Jan-2009 11:21:30 > org.apache.cxf.service.factory.ReflectionServiceFactoryBean > buildServiceFromWSDL > INFO: Creating Service { > http://www.biomart.org:80/MartServiceSoap}BioMartSoapService<http://www.biomart.org:80/MartServiceSoap%7DBioMartSoapService>from > WSDL: > file:/media/share/unsynched/IdeaProjects/saint/trunk/src/main/resources/biomart.wsdl > 09-Jan-2009 11:21:31 org.apache.cxf.phase.PhaseInterceptorChain doIntercept > INFO: Interceptor has thrown exception, unwinding now > org.apache.cxf.interceptor.Fault: Response was of unexpected text/html > ContentType. Incoming portion of HTML stream: <!DOCTYPE HTML PUBLIC > "-//W3C//DTD HTML 4.01 Transitional//EN" " > http://www.w3.org/TR/html4/loose.dtd";> > <HTML><HEAD><META HTTP-EQUIV="Content-Type" CONTENT="text/html; > charset=iso-8859-1"> > <TITLE>ERROR: The requested URL could not be retrieved</TITLE> > <STYLE > type="text/css"><!--BODY{background-color:#ffffff;font-family:verdana,sans-serif}PRE{font-family:sans-serif}--></STYLE> > </HEAD><BODY> > <H1>ERROR</H1> > <H2>The requested URL could not be retrieved</H2> > <HR noshade size="1px"> > <P> > While trying to retrieve the URL: > <A HREF="http://www.biomart.org/biomart/martsoap";> > http://www.biomart.org/biomart/martsoap</A> > <P> > The following error was encountered: > <UL> > <LI> > <STRONG> > Unsupported Request Method and Protocol > </STRONG> > </UL> > > <P> > Squid does not support all request methods for all access protocols. > For example, you can not POST a Gopher request. > <P>Your cache administrator is <A HREF="mailto:root";>root</A>. > > <BR clear="all"> > <HR noshade size="1px"> > <ADDRESS> > Generated Fri, 09 Jan 2009 11:21:31 GMT by > radius2.ncl.ac.uk(squid/2.6.STABLE6) > </ADDRESS> > </BODY></HTML> > > at > org.apache.cxf.interceptor.StaxInInterceptor.handleMessage(StaxInInterceptor.java:73) > at > org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:221) > at org.apache.cxf.endpoint.ClientImpl.onMessage(ClientImpl.java:429) > at > org.apache.cxf.transport.http.HTTPConduit$WrappedOutputStream.handleResponse(HTTPConduit.java:1988) > at > org.apache.cxf.transport.http.HTTPConduit$WrappedOutputStream.close(HTTPConduit.java:1824) > at > org.apache.cxf.transport.AbstractConduit.close(AbstractConduit.java:66) > at > org.apache.cxf.transport.http.HTTPConduit.close(HTTPConduit.java:583) > at > org.apache.cxf.interceptor.MessageSenderInterceptor$MessageSenderEndingInterceptor.handleMessage(MessageSenderInterceptor.java:62) > at > org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:221) > at org.apache.cxf.endpoint.ClientImpl.invoke(ClientImpl.java:276) > at org.apache.cxf.endpoint.ClientImpl.invoke(ClientImpl.java:222) > at org.apache.cxf.frontend.ClientProxy.invokeSync(ClientProxy.java:73) > at > org.apache.cxf.jaxws.JaxWsClientProxy.invoke(JaxWsClientProxy.java:177) > at $Proxy31.getRegistry(Unknown Source) > at > uk.ac.cisban.saint.server.TestSaintBiomartSoapClient.checkMartExistence(TestSaintBiomartSoapClient.java:33) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) > at java.lang.reflect.Method.invoke(Method.java:597) > at > org.junit.internal.runners.TestMethodRunner.executeMethodBody(TestMethodRunner.java:99) > at > org.junit.internal.runners.TestMethodRunner.runUnprotected(TestMethodRunner.java:81) > at > org.junit.internal.runners.BeforeAndAfterRunner.runProtected(BeforeAndAfterRunner.java:34) > at > org.junit.internal.runners.TestMethodRunner.runMethod(TestMethodRunner.java:75) > at > org.junit.internal.runners.TestMethodRunner.run(TestMethodRunner.java:45) > at > org.junit.internal.runners.TestClassMethodsRunner.invokeTestMethod(TestClassMethodsRunner.java:71) > at > org.junit.internal.runners.TestClassMethodsRunner.run(TestClassMethodsRunner.java:35) > at > org.junit.internal.runners.TestClassRunner$1.runUnprotected(TestClassRunner.java:42) > at > org.junit.internal.runners.BeforeAndAfterRunner.runProtected(BeforeAndAfterRunner.java:34) > at > org.junit.internal.runners.TestClassRunner.run(TestClassRunner.java:52) > at > com.intellij.rt.junit4.Junit4ClassSuite.run(Junit4ClassSuite.java:99) > at junit.textui.TestRunner.doRun(TestRunner.java:115) > at > com.intellij.rt.execution.junit.IdeaTestRunner.doRun(IdeaTestRunner.java:94) > at junit.textui.TestRunner.doRun(TestRunner.java:108) > at > com.intellij.rt.execution.junit.IdeaTestRunner.startRunnerWithArgs(IdeaTestRunner.java:22) > at > com.intellij.rt.execution.junit.JUnitStarter.prepareStreamsAndStart(JUnitStarter.java:118) > at > com.intellij.rt.execution.junit.JUnitStarter.main(JUnitStarter.java:40) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) > at java.lang.reflect.Method.invoke(Method.java:597) > at com.intellij.rt.execution.application.AppMain.main(AppMain.java:90) > > javax.xml.ws.soap.SOAPFaultException: Response was of unexpected text/html > ContentType. Incoming portion of HTML stream: <!DOCTYPE HTML PUBLIC > "-//W3C//DTD HTML 4.01 Transitional//EN" " > http://www.w3.org/TR/html4/loose.dtd";> > <HTML><HEAD><META HTTP-EQUIV="Content-Type" CONTENT="text/html; > charset=iso-8859-1"> > <TITLE>ERROR: The requested URL could not be retrieved</TITLE> > <STYLE > type="text/css"><!--BODY{background-color:#ffffff;font-family:verdana,sans-serif}PRE{font-family:sans-serif}--></STYLE> > </HEAD><BODY> > <H1>ERROR</H1> > <H2>The requested URL could not be retrieved</H2> > <HR noshade size="1px"> > <P> > While trying to retrieve the URL: > <A HREF="http://www.biomart.org/biomart/martsoap";> > http://www.biomart.org/biomart/martsoap</A> > <P> > The following error was encountered: > <UL> > <LI> > <STRONG> > Unsupported Request Method and Protocol > </STRONG> > </UL> > > <P> > Squid does not support all request methods for all access protocols. > For example, you can not POST a Gopher request. > <P>Your cache administrator is <A HREF="mailto:root";>root</A>. > > <BR clear="all"> > <HR noshade size="1px"> > <ADDRESS> > Generated Fri, 09 Jan 2009 11:21:31 GMT by > radius2.ncl.ac.uk(squid/2.6.STABLE6) > </ADDRESS> > </BODY></HTML> > > at > org.apache.cxf.jaxws.JaxWsClientProxy.invoke(JaxWsClientProxy.java:218) > at $Proxy31.getRegistry(Unknown Source) > at > uk.ac.cisban.saint.server.TestSaintBiomartSoapClient.checkMartExistence(TestSaintBiomartSoapClient.java:33) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) > at > org.junit.internal.runners.TestMethodRunner.executeMethodBody(TestMethodRunner.java:99) > at > org.junit.internal.runners.TestMethodRunner.runUnprotected(TestMethodRunner.java:81) > at > org.junit.internal.runners.BeforeAndAfterRunner.runProtected(BeforeAndAfterRunner.java:34) > at > org.junit.internal.runners.TestMethodRunner.runMethod(TestMethodRunner.java:75) > at > org.junit.internal.runners.TestMethodRunner.run(TestMethodRunner.java:45) > at > org.junit.internal.runners.TestClassMethodsRunner.invokeTestMethod(TestClassMethodsRunner.java:71) > at > org.junit.internal.runners.TestClassMethodsRunner.run(TestClassMethodsRunner.java:35) > at > org.junit.internal.runners.TestClassRunner$1.runUnprotected(TestClassRunner.java:42) > at > org.junit.internal.runners.BeforeAndAfterRunner.runProtected(BeforeAndAfterRunner.java:34) > at > org.junit.internal.runners.TestClassRunner.run(TestClassRunner.java:52) > at > com.intellij.rt.junit4.Junit4ClassSuite.run(Junit4ClassSuite.java:99) > at > com.intellij.rt.execution.junit.JUnitStarter.main(JUnitStarter.java:40) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) > at com.intellij.rt.execution.application.AppMain.main(AppMain.java:90) > Caused by: org.apache.cxf.interceptor.Fault: Response was of unexpected > text/html ContentType. Incoming portion of HTML stream: <!DOCTYPE HTML > PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" " > http://www.w3.org/TR/html4/loose.dtd";> > <HTML><HEAD><META HTTP-EQUIV="Content-Type" CONTENT="text/html; > charset=iso-8859-1"> > <TITLE>ERROR: The requested URL could not be retrieved</TITLE> > <STYLE > type="text/css"><!--BODY{background-color:#ffffff;font-family:verdana,sans-serif}PRE{font-family:sans-serif}--></STYLE> > </HEAD><BODY> > <H1>ERROR</H1> > <H2>The requested URL could not be retrieved</H2> > <HR noshade size="1px"> > <P> > While trying to retrieve the URL: > <A HREF="http://www.biomart.org/biomart/martsoap";> > http://www.biomart.org/biomart/martsoap</A> > <P> > The following error was encountered: > <UL> > <LI> > <STRONG> > Unsupported Request Method and Protocol > </STRONG> > </UL> > > <P> > Squid does not support all request methods for all access protocols. > For example, you can not POST a Gopher request. > <P>Your cache administrator is <A HREF="mailto:root";>root</A>. > > <BR clear="all"> > <HR noshade size="1px"> > <ADDRESS> > Generated Fri, 09 Jan 2009 11:21:31 GMT by > radius2.ncl.ac.uk(squid/2.6.STABLE6) > </ADDRESS> > </BODY></HTML> > > at > org.apache.cxf.interceptor.StaxInInterceptor.handleMessage(StaxInInterceptor.java:73) > at > org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:221) > at org.apache.cxf.endpoint.ClientImpl.onMessage(ClientImpl.java:429) > at > org.apache.cxf.transport.http.HTTPConduit$WrappedOutputStream.handleResponse(HTTPConduit.java:1988) > at > org.apache.cxf.transport.http.HTTPConduit$WrappedOutputStream.close(HTTPConduit.java:1824) > at > org.apache.cxf.transport.AbstractConduit.close(AbstractConduit.java:66) > at > org.apache.cxf.transport.http.HTTPConduit.close(HTTPConduit.java:583) > at > org.apache.cxf.interceptor.MessageSenderInterceptor$MessageSenderEndingInterceptor.handleMessage(MessageSenderInterceptor.java:62) > at > org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:221) > at org.apache.cxf.endpoint.ClientImpl.invoke(ClientImpl.java:276) > at org.apache.cxf.endpoint.ClientImpl.invoke(ClientImpl.java:222) > at org.apache.cxf.frontend.ClientProxy.invokeSync(ClientProxy.java:73) > at > org.apache.cxf.jaxws.JaxWsClientProxy.invoke(JaxWsClientProxy.java:177) > ... 28 more > > > Process finished with exit code 255 > > > -- > Thanks, > Allyson :) > > Allyson Lister > Research Associate > Centre for Integrated Systems Biology for Ageing and Nutrition > Newcastle University > http://www.cisban.ac.uk > School of Computing Science > Newcastle University > Newcastle upon Tyne, NE1 7RU > -- Thanks, Allyson :) Allyson Lister Research Associate Centre for Integrated Systems Biology for Ageing and Nutrition Newcastle University http://www.cisban.ac.uk School of Computing Science Newcastle University Newcastle upon Tyne, NE1 7RU
