Hi Syed, Actually, the host name 'mandolin.caltech.edu' is already in the /etc/hosts file and the web server works well. I follow your suggestion to try 127.0.0.1, the same trouble happened. could you give me other suggestion? Thank you!
Dong > Hi Dong, > > your apache startup error says it all, the apache server doesnt > recognise your host name (the one which you are specifying in > settings.conf). You need to modify the /etc/hosts file on your system > and then restart apache server. Once done, reconfigure BioMart (only > perl bin/configure.pl....) and restart your apache. A good test would > be to put 127.0.0.1 in settings.conf and configure Biomart, restart > apache and see if you can access the webserver on > http://127.0.0.1:5430/biomart/martview > > Stepwise solution can be seen here: > > http://digitaldeviation.com/articles/apache-articles/apache-error-could-not-reliably-determine-servers-fully-qualified-domain-na > > Good Luck!, > Syed > > > > [email protected] wrote: >> Hi Syed, >> >> here is the output after configure: >> >> # perl bin/configure.pl -r conf/spbase_annotation1022_6.xml >> >> Do you want to install in API only mode [y/n] [n]: n >> >> Checking prerequisites ...[Looks good] >> >> APACHE: /usr/sbin/httpd >> HOST: http://mandolin.caltech.edu >> PORT: 5430 >> PROXY: >> LOCATION: biomart >> >> You can change the above configuration by editing >> "biomart-perl/conf/settings.conf" >> >> >> >> Got usable Apache in /usr/sbin/httpd, probing for version & ModPerl >> configuration >> Have Apache DSO-support and ModPerl library file present, configuring >> ModPerl in httpd.conf. >> Libdir /var/www/html/biomart-perl/lib is not in @INC, adding to @INC >> >> Processing Cached Registry: >> /var/www/html/biomart-perl/conf/cachedRegistries/spbase_annotation1022_6.xml.cached >> >> # /usr/sbin/httpd -d $PWD -f $PWD/conf/httpd.conf >> >> Processing Cached Registry: >> /var/www/html/biomart-perl/conf/cachedRegistries/spbase_annotation1022_6.xml.cached >> >> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >> 131. >> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >> 139. >> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >> 158. >> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >> 169. >> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >> 185. >> httpd: Could not reliably determine the server's fully qualified domain >> name, using mandolin.caltech.edu for ServerName >> >> ------------------------------------------------------------------------ >> attached are the httpd.conf and settings.conf. >> >> Thank you very much for your help! >> >> Dong >> >> >>> Hi Dong, >>> >>> please send me the following: >>> >>> - conf/httpd.conf >>> - on screen output when you run perl bin/configure.pl...... >>> - conf/settings.conf >>> >>> >>> thanks >>> Syed >>> >>> >>> [email protected] wrote: >>> >>>> Hi Friends: >>>> >>>> I successfully set up a mart in one of my machines, then, I moved >>>> whole >>>> mart database into another machine, and the configuring ("perl >>>> bin/configure.pl -r conf/annotation1022_6.xml", "/usr/sbin/httpd -d >>>> $PWD >>>> -f $PWD/conf/httpd.conf")seems work, however, when point web browser >>>> to >>>> the corresponding URL, I got a error: "Firefox can't establish a >>>> connection to the server at mandolin.caltech.edu:5430." does this mean >>>> mart is not portable? do I have to build mart at each machine >>>> separately? >>>> or I missed some httpd configuration? >>>> Thanks! >>>> >>>> Dong >>>> >>>> >>>> >>>> >>>> >>>> >
