Hi Allyson,
I am not sure why it dint reach mart-dev earlier on. The history is
available here:
http://listserver.ebi.ac.uk/mailing-lists-archives/mart-dev/threads.html
May be it never made it to the list because you were sending an
attachment, and its not possible to send attachments to the list :)
Anyways, I guess the reason you see many GO IDs when you select
Description attribute is because of redundant rows against several Gene
IDs and associated GO IDs. The best is to try UniqueRows flag and see if
that removes the irrrelevant rows.
Cheers
Syed
---------- Forwarded message ----------
From: *Allyson Lister* <[email protected]
<mailto:[email protected]>>
Date: 2009/1/16
Subject: interpreting GO IDs
To: "[email protected] <mailto:[email protected]>"
<[email protected] <mailto:[email protected]>>
Not sure if this made it to the mailing list the first time, so
sending again. Apologies if you get it twice!
Hi all,
I've just run this query on the biomart.org <http://biomart.org>
martview application:
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Query>
<Query virtualSchemaName = "default" formatter = "TSV" header = "0" uniqueRows = "0" count =
"" datasetConfigVersion = "0.5" >
<Dataset name = "uniprot" interface = "default" >
<Filter name = "gene_name" value = "cdc13"/>
<Attribute name = "sptr_ac" />
<Attribute name = "go_id" />
<Attribute name = "gene_name" />
<Attribute name = "go_name" />
</Dataset>
</Query>
And I get the attached result (screenshot). I may be extremely dense
here, but why are all of the GO IDs the same for the first few GO
descriptions? When I just choose GO ID (and not also GO description in
the Attributes section, I get a variety of GO IDs.
Anyone know what I'm doing wrong in querying or interpreting?
Many thanks!
--
Allyson Lister
http://lurena.vox.com
CISBAN, http://www.cisban.ac.uk
Newcastle University
--
Allyson Lister
http://lurena.vox.com
CISBAN, http://www.cisban.ac.uk
Newcastle University
--
Allyson Lister
http://lurena.vox.com
CISBAN, http://www.cisban.ac.uk
Newcastle University
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