Hi All,
The issue pertaining to naming conflict when auto-magically Java classes
are generated from WSDL, is now resolved. BioMart Central Portal
reflects the updated code and branch 0.7 also contains the patch. Please
do a 'cvs updat'e on your biomart-perl code and remove the corresponding
check from your Java Client library. You would need to rerun perl
bin/configure.pl...... on biomart-perl to update the server
configuration and kill/restart apache too.
Thanks for your patience.
Syed
Allyson Lister wrote:
Hi Arek,
I'd be happy to wait until I'm finished, but as you can see from my
other posts, I have run into problems along the way. I think I've hit
a wall with the latest one dealing with the response from the SOAP
service having plain text as well as XML. I think this one has me
stumped, in that I cannot proceed at all until I can get a different
response from the SOAP service (one that contains just XML), so I
think I really need the biomart developers' input on that one. Could
you have a look at that email, please?
Thanks very much!
:) Allyson
2009/1/9 Arek Kasprzyk <[email protected]
<mailto:[email protected]>>
On 09/01/09 2:43 AM, "Allyson Lister" <[email protected]
<mailto:[email protected]>> wrote:
> Hi all,
>
> Thanks for all the tips - I agree that modifying the XSD would
seem to be the
> best long-term fix. Otherwise, I'll have a look into some JAXB
modifications,
> like the one already suggested. There's also class customization
(see
>
http://java.sun.com/webservices/docs/1.6/tutorial/doc/JAXBUsing4.html),
which
> might work in our case. The tutorial URL also mentions that the
mappping to a
> different class name can be done either inline in the xsd or
externally via a
> configuration file. Still, changing the original XSD would be
great - if the
> BioMart people agree. :)
Hi Allyson,
How about we will try to finish your debugging process and then
when you
have a complete list of suggestions/problems we'll try our best to
accommodate your wishes to make everybody's life as easy as
possible. I
guess you are the first user of our SOAP interface so we do
appreciate your
input
(as you can see the BioMart ppl are of the sensible kind ;))
A.
--
Thanks,
Allyson :)
Allyson Lister
Research Associate
Centre for Integrated Systems Biology for Ageing and Nutrition
Newcastle University
http://www.cisban.ac.uk
School of Computing Science
Newcastle University
Newcastle upon Tyne, NE1 7RU
