Hi Josh,
fowardnig your email to Ensembl team, who are best to answer this question.
Cheers
Syed
T Joshi wrote:
Hi,
I have question regarding the genomic position of the sequences we
obtain from NCBI36. I referred to the documentation on Ensembl which
states that the base pairs are numbered from the start of the
transcript. In the case when I obtain sequences for 3' UTR region, I can
also choose to select 3'UTR start and end positions.
My concern is with respect to the numbering of these base pairs. Are
start positions aligned to some reference, for example TSS or stop codon
? Your help will be greatly appreciated
Thanks
Josh
