>From time to time, if we add and remove attributes from a query through
>martview, the query will perform fine for a while then will switch to a mode
>where it returns the following text instead of the actual 'Results':
STREAM gene and expression BioMart','STREAM gene and expression BioMart']]}}} ,
{'datasetmenu_1':'','datasetmenu_2':'','databasmenu':'','datasetmenu_3':'','schema':''}
, '- CHOOSE SCHEMA -', '- CHOOSE DATABASE -', '- CHOOSE DATASET -', '0'); //]]>
(STREAM gene and expression BioMart is the name of our mart being interrogated).
The most common time it happens which I have noticed is on clicking Results
after removing some dimension attributes from a query.
This is accompanied by the following message in the apache log:
Argument "" isn't numeric in numeric gt (>) at
//Volumes/RAID1/xraid/Users/jaymoore/BioMart/biomart-perl/conf/templates/default/summarypanel.ttc
line 25.
Once martview is in this state it will not return proper results again until
'New' is selected to start again.
Sorry for two queries in one day :)
Dr. Jay Moore
Senior Research Fellow in Bioinformatics
--
Warwick Systems Biology Centre
Coventry House
University of Warwick
Coventry CV4 7AL
U.K.
+44 (0)24 761 50332
http://www2.warwick.ac.uk/fac/sci/systemsbiology/
