Hi Robert, Could you please send me (not the list, as it filters out attachments) the http.conf file? And it would be hopeful if you can send on screen message when you ran configure.pl as well.
Best regards, Junjun ________________________________ From: [email protected] [mailto:[email protected]] On Behalf Of [email protected] Sent: Thursday, April 30, 2009 10:30 AM To: [email protected] Subject: [mart-dev] BioMart install - Not a GLOB reference TableSet.pm Hi all, I'm trying to install Biomart 0.6 that I downloaded from CVS (I've tried 0.7 and it does the same thing). I can run the configuration step find (using martURLLocation.xml) but get the following error when I start up Apache with the biomart generated httpd.conf. Any ideas what's going wrong? I've tried several ways around this but no luck (biomart 0.7 gives the same error) [r...@popcorn-lx biomart-perl]# /home/biomart/apache/bin/httpd -d$PWD -f$PWD/conf/httpd.conf Syntax error on line 37 of /home/biomart/biomart-perl/conf/httpd.conf: Not a GLOB reference at /usr/local/lib/perl5/5.10.0/base.pm line 27.\nBEGIN failed--compilation aborted at /home/biomart/biomart-perl/lib/BioMart/Dataset/TableSet.pm line 57.\nCompilation failed in require at /home/biomart/biomart-perl/lib/BioMart/Registry.pm line 53.\nBEGIN failed--compilation aborted at /home/biomart/biomart-perl/lib/BioMart/Registry.pm line 53.\n\t(in cleanup) Not a GLOB reference at /usr/local/lib/perl5/5.10.0/base.pm line 27.\nBEGIN failed--compilation aborted at /home/biomart/biomart-perl/lib/BioMart/Dataset/TableSet.pm line 57.\nCompilation failed in require at /home/biomart/biomart-perl/lib/BioMart/Registry.pm line 53.\nBEGIN failed--compilation aborted at /home/biomart/biomart-perl/lib/BioMart/Registry.pm line 53.\nCompilation failed in require at /home/biomart/biomart-perl/conf/httpd.conf line 71.\n Line 71 in httpd.conf is 'require "Biomart/Registry.pm"' My configuration is: Fedora linux release 9 (Sulphur) (kernal 2.6.25-14.fc9 i686) perl v5.10.0 (i686-linux) Apache 2.0.63 mod_perl 2.0.4
