Hi Eric,
its seems that your connection with database is broken. please check
your database server is running ???
Best,
Syed
Junjun Zhang wrote:
Hi Eric,
Please send us the content of your settings.conf file (which is under
conf folder). Please don't send the file as an attachment, instead,
you can copy and paste the file content in the email message body.
Regards,
Junjun
------------------------------------------------------------------------
*From:* [email protected] [mailto:[email protected]]
*On Behalf Of *Eric Wooten
*Sent:* Friday, May 01, 2009 2:31 PM
*To:* [email protected]
*Subject:* [mart-dev] broken mart
Hi, my previously working installation has quit, and now presents
this error at http://localhost:9002/biomart/martview
ERROR: caught BioMart::Exception: non-BioMart die(): Can't
connect to data source 'dbi:mysql;host=127.0.0.1;port=3306'
because I can't work out what driver to use (it doesn't seem to
contain a 'dbi:driver:' prefix and the DBI_DRIVER env var is not
set) at /Library/WebServer/Documents/biomart/lib/BioMart/Web.pm
line 353
If you repeatedly get directed to this error page, there may be
a problem with your current session parameters. To clear your
session and start with a clean slate, please click the *New*
button below.
Stacktrace:
Exception::Class::Base::new
/Library/WebServer/Documents/biomart/cgi-bin/martview:78
ModPerl::ROOT::ModPerl::Registry::Library_WebServer_Documents_biomart_cgi_2dbin_martview::handler
/Library/Perl/5.8.8/darwin-thread-multi-2level/ModPerl/RegistryCooker.pm:204
(eval)
/Library/Perl/5.8.8/darwin-thread-multi-2level/ModPerl/RegistryCooker.pm:204
ModPerl::RegistryCooker::run
/Library/Perl/5.8.8/darwin-thread-multi-2level/ModPerl/RegistryCooker.pm:170
ModPerl::RegistryCooker::default_handler
/Library/Perl/5.8.8/darwin-thread-multi-2level/ModPerl/Registry.pm:31
ModPerl::Registry::handler -e:0
(eval) -e:0
I've looked at DBD:mysql and DBI to make sure they were still in
order, checked SQL accessibility at the terminal, tried fiddling
with the various config files to no avail. Martview seems to
configure/start without error but actually trying to access the mart
is met by the above error page.
Incidentally, there's also no such thing as a "New button below."
Any thoughts?
Eric
