We are wondering where the bottlenecks are in some of our simple
queries (grab 30k peptides for a single organism into a fasta file)
that take 10 minutes or more on an over-equipped under-utilized
database server and web server.
David M. Goodstein
Joint Genome Institute / Lawrence Berkeley National Lab
Center for Integrative Genomics / UCBerkeley
http://www.phytozome.net
On 23 Jun 2009, at 15:22, Syed Haider wrote:
Hi David,
biomart-perl/lib/BioMart/Initializer.pm
look for INITBATCHSIZE
just wondering, why is that you want to change it ?
Best,
Syed
David M. Goodstein wrote:
If I wanted query-runner to use a larger default
initial_batchsize, where would I set that (e.g., conf/
settings.conf), the MartRegistry xml, or somewhere else)?
David M. Goodstein
Joint Genome Institute / Lawrence Berkeley National Lab
Center for Integrative Genomics / UCBerkeley
http://www.phytozome.net
