Hi Matthew,
We are indeed aware of this bug and we hope to have the problem fixed
on the live site today. Many apologies for any inconvenience.
Regards,
Rhoda
On 22 Jul 2009, at 06:19, Syed Haider wrote:
Hi Matthew,
The said problem has been reported to Ensembl team (cc'ed here)
already. They should be able to give us an idea about the ETA of
fix. The issue is with Danio Rerio sequences because of internal
misconfiguration in Ensembl BioMart release 55.
Best,
Syed
Matthew Strand wrote:
Sure thing, here is an XML query that no longer works.
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Query>
<Query virtualSchemaName = "default" formatter = "FASTA" header =
"0" uniqueRows = "0" count = "" datasetConfigVersion = "0.6" >
<Dataset name = "drerio_gene_ensembl" interface =
"default" >
<Filter name = "ensembl_peptide_id" value =
"ENSDARP00000069175"/>
<Attribute name = "ensembl_gene_id" />
<Attribute name = "ensembl_transcript_id" />
<Attribute name = "peptide" />
<Attribute name = "description" />
<Attribute name = "external_gene_id" />
<Attribute name = "external_gene_db" />
<Attribute name = "ensembl_peptide_id" />
</Dataset>
</Query>
--
Matthew Strand
[email protected] <mailto:[email protected]>
phone: (626) 524-4449
skype: matstrand
Rhoda Kinsella Ph.D.
Ensembl Bioinformatician,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.
