Hi Dong: The readdir error occurs if you're using Perl 5.8.9 or 5.8.10. The error is not fatal, and the configuration will still complete. However, the message also indicates that the perl module, Readonly, is missing. Please install this pre-requesite and let us know if you still have problems.
Regards, Christina > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of [email protected] > Sent: Monday, November 02, 2009 5:35 PM > To: [email protected] > Subject: [mart-dev] trouble with configuring the BioMart Perl API > > Hi, > > when I configure the Perl API, I got the following error > message, does anybody know what's wrong with it? > > Thanks for your help > > Dong > > ---------------------------------------------------------------------- > > > biomart-perl]# perl bin/configure.pl -r conf/registryURLPointer.xml > > Do you want to install in API only mode [y/n] [n]: n > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > readdir() attempted on invalid dirhandle DIR at > bin/configure.pl line 286, <STDIN> line 1. > closedir() attempted on invalid dirhandle DIR at > bin/configure.pl line 287, <STDIN> line 1. > > Checking prerequisites ... please install the following modules: > > Readonly > > >
