Hi Kiran,
I am away on Christmas holidays at the moment and I will send you the
mart xml files when I return in the new year.
Regards
Rhoda
On 17 Dec 2009, at 22:17, Kiran Mukhyala wrote:
Thanks Arek, Richard and Yong, for your quick replies!
In that case, I think I will need the MartBuilder XML files to create
Ensembl-56 marts from scratch. I just asked for these files on
ensembl-dev but please let me know in case you know where to find
them.
Thanks again.
-Kiran
On Thu, Dec 17, 2009 at 12:16 PM, Arek Kasprzyk <[email protected]
> wrote:
On 17/12/09 2:49 PM, "Kiran Mukhyala" <[email protected]> wrote:
> Hello,
>
> I am new to Biomart.
> Can someone please tell me how to update a mart after the source
database is
> updated (added additional rows in some tables, NOT schema changes).
> If it helps to know, I am trying to update an existing local
Ensembl mart.
>
> Thank you in advance.
>
> -Kiran
Hi Kiran,
There is no explicit mechanism for doing updates on already created
mart.
You just need to drop the old one and re-run the procedure that
created it.
If this was done using Mbuilder we can provide further instructions
a.
Rhoda Kinsella Ph.D.
Ensembl Bioinformatician,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.
