Hi Joachim,
please check:
biomart-perl/conf/httpd.conf for DAS URLs
and
see the das/dsn request on your server to see which requests are being
served.
Also check the das importables and exportables in your configuration.
Thats is all what you need to investigate. In case you do not spot
anything weird, please let us know and we are happy to take a look at
your XMLs.
Best
Syed
Joachim Baran wrote:
Hello,
When I am running a simple DAS request, such as:
http://myhost/biomart/das/default__hsapiens_gene_ensembl__ensembl_das_chr/features?segment=13:31787617,31871805
I am getting a "XML Parsing Error: not well-formed" message, which
includes the following line:
<LINK
href="http://myhost/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id|hsapiens_gene_ensembl.default.feature_page.mydata_1090&FILTERS=hsapiens_gene_ensembl.default.filters.ensembl_gene_id.ENSG00000187676&VISIBLEPANEL=resultspanel"></LINK>
The attribute mydata_1090 is not present in my mart (it has a
different numerical part), so I am wondering where BioMart gets this
data from. I am also surprised that an extra attribute besides the
gene_id is included at all. Why would that be the case?
DAS queries have worked before for my mart and I am not sure what I
have changed that causes this behaviour. I would appreciate if someone
could point out to me what to look for.
Thanks,
Joachim