It's not an easy task unfortunately - the full process for Ensembl includes a complex series of steps involving MartBuilder and MartEditor that can take a couple of days to complete. As far as I know it's not publicly documented anywhere. If you can find their contact details (Googling works) then Rhoda Kinsella is the person to talk to at the EBI as she is (or at least used to be) in charge of building the Ensembl marts each release.
cheers, Richard On 2 Jul 2010, at 09:43, Wenyan NONG wrote: > Dear mart-dev, > > I have loaded my genomes sequences and genes annotations into the core > database from scratch, and then I would like to do some data mining using > biomart, how can I create the dataset of the biomart from these core > databases, or I should do it manually and one bye one, using MartBuilder and > MartEditor. Is there any instruction for that? I am using ensembl 57 and > biomart 0.7. > > I have been asking for help in ensembl-dev mail list, but have no lucky. Any > advice would be appreciated! > > Thank you very much! > > Best, > Wenyan > CUHK, HK. -- Richard Holland, BSc MBCS Operations and Delivery Director, Eagle Genomics Ltd T: +44 (0)1223 654481 ext 3 | E: [email protected] http://www.eaglegenomics.com/
