Hi Syed, Now I get this error
I also tried as sudo. Still got the same error. Any suggestions? [s...@sans-lab-04 biomart-perl]$ /local/biomart/apache/bin/httpd -d $PWD/ -f $PWD/conf/httpd.conf Processing Cached Registry: /local/biomart/biomart-perl/conf/cachedRegistries/registryURLPointer.xml.cached Syntax error on line 37 of /local/biomart/biomart-perl/conf/httpd.conf: failed to resolve handler `Apache2::PerlSections': Can't locate Apache2/PerlSections.pm in @INC (@INC contains: /local/biomart/biomart-perl/lib /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 . /local/biomart/biomart-perl/) at (eval 106) line 3.\n Thanks and Regards, Sri Krishna On Wed, Dec 15, 2010 at 1:28 PM, Syed Haider <syed.hai...@oicr.on.ca> wrote: > Of course, its a directory. You need to type this: > > /local/biomart/apache/bin/httpd -d $PWD/ -f $PWD/conf/httpd.conf > > > > Syed > > On 15/12/2010 12:18, Sri Krishna Suresh Kumar wrote: >> >> Hey Syed, >> >> I get this following error >> >> -bash: /local/biomart/apache/bin: is a directory >> >> Thanks and Regards, >> Sri Krishna >> >> On Wed, Dec 15, 2010 at 1:23 PM, Syed Haider<syed.hai...@oicr.on.ca> >> wrote: >>> >>> Hi Sri, >>> >>> please write what exactly is the ERROR, that would definitely help us. >>> >>> Syed >>> >>> On 15/12/2010 12:13, Sri Krishna Suresh Kumar wrote: >>>> >>>> Hi Leandro and Syed, >>>> >>>> Thanks a lot for the quick replies. My perl version is 5.8.8. I have >>>> also attached the registryURLPointer file. >>>> >>>> The --clean option did the trick. Got this message in the end >>>> "Compiling templates for visible datasets". >>>> >>>> Thanks a lot again. >>>> >>>> Could you kindly help me with the next step. >>>> >>>> In order to start and stop the mart view, the help document says I have >>>> to >>>> type >>>> >>>> /my/chosen/Apache/binary -d $PWD -f $PWD/conf/httpd.conf >>>> >>>> So I try and type >>>> >>>> /local/biomart/apache/bin -d $pwd -f $pwd/conf/httpd.conf >>>> >>>> And I get an error message. I know I am doing something wrong here. >>>> Could you tell me how to correct the mistake and start the mart view >>>> correctly? >>>> >>>> Thanks and Regards, >>>> Sri Krishna >>>> On Wed, Dec 15, 2010 at 12:53 AM, Syed Haider<syed.hai...@oicr.on.ca> >>>> wrote: >>>>> >>>>> Hi Sri, >>>>> >>>>> have you tried --clean option while you do perl bin/configure ? >>>>> >>>>> >>>>> Syed >>>>> >>>>> On 14/12/2010 15:32, Sri Krishna Suresh Kumar wrote: >>>>>> >>>>>> Hello, >>>>>> >>>>>> I have been trying to install Biomart in my work system. >>>>>> >>>>>> I was able to install pre-requisites for biomart-perl using CPAN and >>>>>> also completed the installation of Apache (2.2.17) and >>>>>> mod-perl(2.0.4). >>>>>> >>>>>> I have also installed the Biomart-perl api (step 1.4.3.1) and I >>>>>> recieved the message "Looks good... You are done". >>>>>> >>>>>> After this step, when I try to configure the MartView, after chaging >>>>>> the setting.conf file and executing the command perl "bin/configure.pl >>>>>> -r conf/registryURLPointer.xml" with the answer n to the subsequent >>>>>> question, I did not get the message "Compiling templates for visible >>>>>> datasets". Instead It stops prematurely with out any major error >>>>>> outputs. However I see a warning message of use of uninitialised >>>>>> variable in a CPAN module. I am attaching the file with the command >>>>>> issued and the subsequent output received. >>>>>> >>>>>> Could you let me know if I am doing anything wrong? Or if this is >>>>>> normal? >>>>>> >>>>>> Thanks and Regards, >>>>>> Sri Krishna Suresh Kumar >>>>> >>> >
