The Soviet Union was obsessed with one grain in particular: wheat. And
on quite a number of occasions Lysenko and his researchers were
criticized for not producing a variety that could grow well in the
short growing season. And then there was the controversy over winter
vs. spring wheat (with the wrong approach apparently originating from
the US actually). At any rate, eventually the Soviet Union
over-planted and over-extended the range of winter wheat for the
climates, and after a series of harsh winters, experienced disastrous
crop failures requiring them to import huge amounts of wheat.

But wheat is a complex plant that doesn't yield easily to Mendelian
genetics. It's a haploid hybrid of three diploid grasses. In the terms
of the more advanced genetics, it is genomically unstable. Mendelians
mocked Lysenko when he reported grains of rye appearing in ears of
wheat grain. But Lysenko was right about this; it's quite possible for
wheat to introgress with diploids like rye as well as tetraploid
species.

There is even a hybrid of wheat and rye now produced commercially
(this was done without advanced GM techniques). The Soviet Union had
long been interested in this, but as Lysenko himself reported, the
results they got were sterile. They also tried crossing wheat with
other native grasses to make it more hardy and productive in the
harsher climates of the Soviet Union.

 Success at getting a wheat-rye cross that could reproduce came much later.

The major advances in improving wheat production came in the 19th
century more or less indifferent to Mendelian genetics. Mendelian
genetics and inbreeding techniques in the first half of the 20th
century did yield some gains into disease resistance. This was
combined with the traditional plant breeding methods (of which
Michurin and Lysenko approved) in Mexico to yield the so-called Green
Revolution's hybrids (the key was old-fashioned cross-breeding with E.
Asian dwarf wheat). One irony would be that such a big step forward
was based on such an old technique. The other irony might be that it
couldn't be done today because some company or government might have a
patent on the Japanese wheat's genes!

http://mbe.oxfordjournals.org/cgi/content/abstract/msi196v1

Introgressive hybridization has played a crucial role in the evolution
of many plant species, especially polyploids. The duplicated genetic
material and wide geographical distribution facilitates hybridization
and introgression among polyploid species having either homologous or
homoeologous genomes. Such introgression may lead to the production of
recombinant genomes that are more difficult to form at the diploid
level. Crop genes that have introgressed into wild relatives can
increase the capability of the wild relatives to adapt to agricultural
environments and compete with crops, or to compete with other wild
species. Although the transfer of genes from crops into their
con-specific immediate wild progenitors has been reported, little is
known about spontaneous gene movement from crops to more distantly
related species. We describe recent spontaneous DNA introgression from
domesticated polyploid wheat into distantly related, wild tetraploid
Aegilops peregrina (syn. Ae. variabilis), and the stabilization of
this sequence in wild populations despite not having homologous
chromosomes. Our results show that DNA can spontaneously introgress
between homoeologous genomes of species of the tribe Triticeae and, in
the case of crop-wild relatives, possibly enrich the wild population.
These results also emphasize the need for fail-safe mechanisms in
transgenic crops to prevent gene flow where there may be ecological
risks.
Keywords: Introgression; Wheat; Triticum aestivum; Aegilops peregrina;
Polyploidy; Transgenic crops.

http://www.desicca.de/plant_breeding/Rye_introgression/body_rye_introgression.html

Current  list of wheats with rye introgression

of  homoeologous groups 1, 4 and 5

After  the  first  reports on  spontaneous  wheat-rye  chromosome
substitutions 5R(5A) by Katterman (1937), O'Mara (1946) and Riley and
Chapman (1958), during the past three decades  particularly, 1R(1B)
substitutions and 1RS.1BL translocations were described in more  than
200  cultivars  of wheat  from  all over  the  world (Blüthner  and
Mettin 1973; Mettin et al.  1973;  Zeller  1972; Zeller  1973;  Zeller
and Fischbeck 1971). Their  most  important phenotypic deviation from
common wheat cultivars is the so-called wheat-rye resistance, i. e.
the presence of wide-range resistance to  races  of powdery mildew and
rusts (Bartos  and  Bares  1971; Zeller 1973), which is linked with
decreased breadmaking  quality (Zeller  et  al. 1982), good ecological
adaptability  and yield performance (Rajaram et al. 1983; Schlegel and
Meinel 1994). The origin of the alien chromosome was intensively
discussed  by genetic  and  historical reasons. It turned out  that
basically four sources   exist - two in Germany (it might be one
source, see Schlegel and Korzun 1997), one in the USA and one in
Japan. The variety 'Salmon' (1RS.1BL) is a representative of  the
latter (Tsunewaki 1964) and the variety 'Amigo' (1RS.1AL)  is  a
representative  of the penultimate group (Beronsky et  al.  1991; The
et al. 1992), while almost all remaining cultivars  can  be traced
back to one or to the other German origin  (Zeller  1973; Blüthner and
Mettin 1977). There  was  no doubt so far that the Japanese  and  the
American derivatives differ from one another and from the German
sources. Although  on  two  places of Germany  - Salzmuende  near
Halle/S (breeder:  Riebesel)  and  Weihenstephan  near Munich
(breeder: Kattermann)  - wheat-rye crosses were already carried  out
since the twenties  and thirties and independent  pedigrees  could  be
fragmentally reconstructed  by the few  reports  left  (Blüthner
1992),  some authors presumed only one German source (Lein 1975;
Moonen and Zeven 1984; Schlegel and Korzun 1997). For  breeding
programmes  additional  recombination  within  the translocated  1RS
arm  of rye and between  the  different  wheat genetic backgrounds is
wished (Müller et al. 1991a; Lutz et  al. 1992).

http://en.wikipedia.org/wiki/Physiological_and_molecular_wheat_breeding#3..09Mendelian_genetics_and_the_green_revolution

3. Mendelian genetics and the green revolution

Mendel's experiment stimulated research by many plant scientists
dedicated in improving crop production (plant breeders) through plant
breeding. The most famous contribution of Mendelian genetics was
hybridization. There was remarkable improvement in three economically
important crops that made the food deficit world into a food surplus
world. This is called the green revolution. The first, development of
hybrid maize, the second development of high yielding and input
responsive “semi-dwarf wheat” (CIMMYT breeder N.E. Borlaug received
Nobel prize for peace in 1970), the third is high yielding “short
sutured rice” cultivars. Similarly the remarkable improvements were
done in other crops like sorghum and alfalfa.

http://www.statemaster.com/encyclopedia/Wheat

 Plant Breeding

In traditional agricultural systems wheat is often grown as landraces,
informal farmer-maintained populations that often maintain high levels
of morophological diversity. Although landraces of wheat are no longer
grown in Europe and North America, they continue to be important
elsewhere. The origins of formal wheat breeding lie in the nineteenth
century, when single line varieties were created through selection of
seed from a single plant noted to have desired properties. Modern
wheat breeding developed in the first years of the twentieth century
and was closely linked to the development of Mendelian genetics. The
standard method of breeding inbred wheat cultivars is by crossing two
lines using hand emasculation, then selfing or inbreeding the progeny.
Selections are identified (shown to have the genes responsible for the
varietal differences) ten or more generations before release as a
variety or cultivar.[14] Landrace refers to domesticated animals or
plants adapted to the natural and cultural environment in which they
live (or originated) and, in some cases, work; they often develop
naturally with minimal assistance or guidance from humans (or from
humans using traditional rather than modern breeding methods), hence
differ somewhat from... Mendelian inheritance (or Mendelian genetics
or Mendelism) is a set of primary tenets that underlie much of
genetics developed by Gregor Mendel in the latter part of the 19th
century. ...


F1 hybrid wheat cultivars should not be confused with wheat cultivars
deriving from standard plant breeding. Heterosis or hybrid vigor (as
in the familiar F1 hybrids of maize) occurs in common (hexaploid)
wheat, but it is difficult to produce seed of hybrid cultivars on a
commercial scale as is done with maize because wheat flowers are
complete and normally self-pollinate.[14] Commercial hybrid wheat seed
has been produced using chemical hybridizing agents, plant growth
regulators that selectively interfere with pollen development, or
naturally occurring cytoplasmic male sterility systems. Hybrid wheat
has been a limited commercially success, in Europe (particularly
France), the USA and South Africa.[15]

http://www.indiatogether.org/2009/sep/dsh-borlaug.htm

23 September 2009 - It was discovery of the stocky Japanese wheat
variety Norin-10, which the US military advisor D C Salmon sent back
home in the early 1960s that changed the face of global agriculture.
This was the variety, the only known semi-dwarf traditional wheat
strain, that Dr Norman Borlaug was keenly looking for. Crossed with
the rust-resistant varieties that Borlaug had developed at the
International Centre for Wheat and Maize Research (CIMMYT) in Mexico,
the world got the miracle improved varieties that made history.

These semi-dwarf plants developed by Dr Borlaug responded to the
application of chemical fertilisers and produced a bountiful grain
harvest. The yields multiplied under favourable conditions, and
Borlaug knew that the best place to apply the new technology was
obviously India, with the largest population of hungry and starved in
the world. "I tried my best to convince the Indian politicians about
the utility of these semi-dwarf varieties in fighting hunger, but they
were not interested," he once told me. Although the agricultural
scientists, by and large, were convinced about the yield potential of
these varieties, the politicians were not.

----------------

Dr Borlaug remained steadfast all through on the role of chemical
fertiliser and pesticides. He was so adamant that when the Third World
Academy in Italy presented a paper on how Brazil had achieved
remarkable crop yields in soybean and sugarcane without applying
chemical nitrogen, he didn't agree. It was only after he travelled to
Brazil and saw for himself the crop yields that he at least
acknowledged the reality. But even then, he wouldn't accept
agriculture without chemical fertilisers and pesticides. Such was his
blind faith in plant breeding that initially he even rejected
biotechnology, saying it was a 'waste of time." Later, he backed
genetic engineering.

http://www.eeob.iastate.edu/faculty/WendelJ/pdfs/Current%20Genomics%202002.pdf

Many important crop
plants, including wheat, oat, coffee, potato, canola, soybean,
sugarcane, tobacco and cotton are typical polyploids.
Because most ancient polyploids have undergone an
evolutionary process of chromosomal and perhaps genic
“diploidization”, their polyploid history may be obscured at
the cytological and classic genetics levels. Consequently, the
polyploid nature of many plant genomes was not evident
until the advent of comparative genomics and whole-genome
sequencing. Recent and prominent examples include maize
[17,18] and Arabidopsis [19-21] — both species were
traditionally recognized as diploids, but in fact their genomes
harbor compelling evidence of historical cycles of genome
doubling. Given these and other recent examples from plants
[e.g. 22,23-26], it is probably safe to state that there are no
bona fide diploid species in the plant kingdom.

Perhaps of more significance, the young (~ 8,500 year-old)
natural hexaploid species Triticum aestivum (common or
bread wheat), vital to the development and present
sustenance of human civilization, is a classic example of
speciation via allopolyploidy. This species is an
allohexaploid, with a genomic constitution BBAADD,
formed from a natural hybridization event between the
allotetraploid Triticum turgidum (BBAA) and a taxon similar
to modern Aegilops tauschii (DD), with genome doubling
most probably resulting from fertilization between
unreduced gametes [37,38].

http://www.weizmann.ac.il/plants/levy/hybridity.html

Hybridity and Polyploidy

Interspecies hybridization and polyploidy are prominent in the plant
kingdom. Wheat for example is an hexaploid, whose genome is an hybrid
combining the genome of three diploid progenitors. Polyploidization
can occur overnight, for example through inter-specific hybridization
followed by genome doubling via unreduced gametes. It is thus one of
the most efficient and rapid way to generate a new species and is a
driving force in plant genome evolution. The paradigm to explain the
success of polyploidy was that the increased range of gene dosage, the
new heterotic interactions between alleles, homeoalleles or genes and
the buffering of the mutation load resulting from gene duplication
facilitate the formation of novel genes and the establishment of the
new species. While this long-held view is still valid, there are now
new twists to the paradigm. Recent studies done in collaboration with
Prof. Moshe Feldman, have emphasized the importance of non-Mendelian
processes and described their time course. In these studies, synthetic
polyploids were made and analyzed immediately after formation. These
studies show that a new, non-additive variation, not previously
present in the diploid progenitors, can be induced immediately upon
polyploidization rather than on an evolutionary scale. The basis of
this new variation is both genetic and epigenetic. The types of
non-Mendelian changes observed were: programmed elimination of
sequences (coding and non-coding); gene silencing associated with
cytosine methylation and transcriptional activation of
retrotransposons. These findings were confirmed by a recent
bioinformatics analysis using public data on the mapping and
expression of DNA sequences in natural hexaploid wheat rather than in
synthetic polyploids. This rapid reorganization of the genome
structure and expression is now investigated in wheat as well as in
model systems, Arabidopsis and budding yeast. The current work in
wheat aims at determining the precise time course and the mechanism of
programmed DNA elimination. In Arabidopsis, we are making use of a new
method of gene targeting recently developed in our laboratory to
follow the expression of alleles as a function of hybridity and of
gene dosage variation achieved through polyploidization. We expect
that epigenetic changes will be triggered as a result of hybridity
and/or polyploidization, that may lead to the silencing of specific
alleles. In budding yeast, we are collaborating with Prof. Naama
Barkai to analyze the new patterns of gene expression in yeast hybrids
and in polyploids derived from interspecific crosses. Moreover, we are
analyzing the genetic basis for the heterosis (Hybrid vigor) that has
been observed in some of the hybrids.

http://www.marxistsfr.org/reference/archive/lysenko/works/1950s/new.htm

 In 1949 a search for rye grains in wheat spikes was instituted in the
fields of the foothill districts where winter-wheat crops are
frequently found to be adulterated with rye. Until a few years ago
scientists did not know the original cause of such adulteration in
these districts.

V. K. Karapetian, M. M. Yakubtsiner, V. N. Gromachevsky and a number
of other research workers as well as a number of agronomists and
students found single grains of rye in durum- and soft-wheat spikes,
i.e., in the spikes of two wheat species which grew in the fields of
various foothill districts. Over 200 such grains of rye were found in
1949. These grains were sown at the Institute of Genetics of the
Academy of Sciences of the U.S.S.R., in an experimental field of the
Lenin Academy of Agricultural Sciences of the U.S.S.R. at Gorki
Leninskiye, and at the K. A. Timiryszev Agricultural Academy in
Moscow.

Unthreshed spikes of durum and soft wheat were likewise sent to the
Lenin Academy of Agricultural Sciences of the U.S.S.R. from the
districts mentioned. While they were being threshed at different
biological research institutions several persons found some more
grains of rye.

>From these grains of rye, which had developed in spikes of durum and
soft wheat, a diversity of plants was grown. These plants, with few
exceptions, were neverthleless typical rye. Only in a very few cases
were wheat plants obtained from rye-like grains.

In all the above cases where grains of one species of plant were found
in spikes of neither species neither the plants themselves nor their
threshed spikes showed any signs whatever of being intermediate forms.
They seemed to be typical, ordinary spikes of durum or soft wheat. But
the internal state of these wheat plants was no longer the usual one,
was no longer qualitatively homogeneous in respect to species. This is
indicated by the fact that these wheat grains produced not only grains
of wheat but also some few grains of rye, that is, grains of another
species.

In 1949 the Lenin Academy of Agricultural Sciences of the U.S.S.R.
received samples of oats whose panicles contained single grains of
wild oats alongside of the grains of cultivated oats, that is to say,
the plants of one species, Avena sativa, brought forth individual
grains of another species, A. fatua. Publications abroad as well as in
our country have likewise repeatedly referred to cases where wild oats
were found in pure-line oats.

It has been observed year after year when cultivating branched wheat
(Triticum turgidum) on experimental plots of the Lenin Academy of
Agricultural Sciences of the U.S.S.R. and in a number of other
localities that admixtures of soft and durum wheat, oats, 2- and
4-rowed barley and also spring rye appear in the crops.

All our observations led us to conclude that the original source of
these admixtures was the branched wheat (Triticum turgidum) itself.

In 1950 it was discovered in several cases that barley plants which
were growing as an admixture in branched-wheat crops had developed
from grains which in external appearance could not be distinguished
from branched-wheat grains.

In practical farming it has long been assumed and repeatedly asserted
that one kind of agricultural plant can be converted or transformed
into another, as for instance wheat into rye. A great controversy was
waged in print on this subject in our country as early as the first
half of the previous century. Therefore the conversion of durum wheat
into soft or the conversion of durum and soft wheat into rye would
seem by itself to be nothing new. However, all the new facts we have
adduced were obtained in a systematic way or as the result of a
systematic search.

As regards the past, before our investigation started, the facts were
as follows. In fields sown to durum wheat individual plants of soft
wheat were discovered. When this wheat was resown the soft-wheat
plants multiplied more and more and finally ousted the durum wheat.
Similarly, individual rye plants were found amidst winter wheat. When
the seeds obtained from crops grown in such fields were resown the
rapidly multiplying rye plants pushed out the wheat. But scientists
refused as a matter of principle to consider any such discoveries of
plants of one species in the stands of other species as a result of
the conversion of one species into another. Legitimate doubts were
always voiced. It was not established whether or not the prime cause
of this adulteration was ordinary mechanical admixture so frequently
met with. There was no assurance that the original seeds really did
not contain an admixture of a few seeds of another species, or that
seeds of another species had not been carried to the sown field in
question by water, wind, birds or some other agency; nor could one be
sure that seeds of the admixed breed had not been in the soil of that
field for a long period of time, etc.

This explains why it was impossible to prove by facts relating to the
past that the emergence of one plant species from another species
might also be an original source of the various crop admixtures and
adulterations, besides their frequent introduction into crops by
mechanical means.

All the enumerated objections to the idea of one species giving rise
to another become invalid in the cases referred to by us. Individual
grains of rye discovered in spikes of wheat which had grown for
several generations under definite conditions could not possibly have
been introduced into these spikes from without by either birds or man
or in any other way.

These grains of rye were generated by wheat plants and developed in
spikes of wheat.

The supposition that these seeds might be of hybrid origin also goes
by the board. It is a known fact that wheat can be crossed with rye,
though seldom. However, in these cases the product obtained is an
obvious rye-wheat hybrid which can readily be distinguished from wheat
and rye by its external appearance.

Besides, rye-wheat hybrids, as a rule, are self-sterile; they yield no
seeds unless they are pollinated with the pollen of one of their
parents, preferably the wheat. In the case at hand the grains of rye
from the wheat spikes produced ordinary rye plants with normal
fertility. The said plants manifested no hybrid properties whatever.

The same applies to the other facts we have mentioned.

The above examples of the generation of particular plant species by
others are particularly valuable because analogous cases may be
observed any year in suitable fields. Similar results may likewise be
obtained by cultivating plants specially sown under experimental
conditions for this purpose.

http://en.wikipedia.org/wiki/Triticale

When crossing wheat and rye, wheat is used as the female parent and
rye as the male parent (pollen donor). The resulting hybrid is sterile
and has to be treated with colchicine to induce polyploidy and thus
able to reproduce itself.

The primary producers of triticale are Poland, Australia, Germany,
France, China and Belarus. In 2005, according to the Food and
Agriculture Organization (FAO), 13.5 million tons were harvested in 28
countries across the world.[citation needed]

The triticale hybrids are all amphidiploid, which means the plant is
diploid for two genomes derived from different species. In other
words, triticale is an allotetraploid. In earlier years most work was
done on octoploid triticale. Different ploidy levels have been created
and evaluated over time. The tetraploids showed little promise, but
hexaploid triticale was successful enough to find commercial
application.[citation needed]

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