Re: [matplotlib-devel] matplotlib 1.3.0rc3 tomorrow

Wed, 19 Jun 2013 14:49:09 -0700 

On 06/19/2013 05:03 PM, Russell E. Owen wrote:

In article <51c0b2f6.5070...@stsci.edu>,
  Michael Droettboom <md...@stsci.edu>
  wrote:


I have tagged a 1.3.0rc3 and uploaded a tarball to Sourceforge.

We may not get all the binaries up in the next little while, so I'll
wait for those and then make an announcement on matplotlib-users.  After
a couple of weeks, assuming no serious problems, we'll be ready for
1.3.0 final.

Thanks again to everyone for their help with this release!

I have uploaded the MacOS 10.6 64-bit binary. However, there were a few
unit test failures, including the font complaint that I first saw in an
earlier 1.3.0 prerelease, plus one about pep8 that I've never seen
before.
The pep8 one is because the pep8 tool is not installed on your system. We attempted to fix this so it was not a hard requirement, but obviously missed this. I'll fix that as part of the next release candidate.
The font issue was reportedly fixed by 9ccacff <https://github.com/pwuertz/matplotlib/commit/9ccacffe81e0d4a48e4a4b19064460b94c6f77c9>, but apparently not. I'll ping Peter Wuertz about that. 

Mike



I have appended the output from python -c "import matplotlib as m ;
m.test(verbosity=1)"

-- Russell

Last login: Wed Jun 19 12:36:54 on ttys001
localhost$ python -c "import matplotlib as m ; m.test(verbosity=1)"
.........................................................................
.........................................................................
.........................................................................
..........kpathsea: Invalid fontname `Bitstream Vera Serif', contains ' '
Ekpathsea: Invalid fontname `Bitstream Vera Serif', contains ' '
EK.....K.................................................................
.........................................................................
.........................................................................
.........................................................................
.........................................................................
.........................................................................
.........................................................................
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.........................................................................
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.........................................................................
.........................................................................
...................................../Library/Frameworks/Python.framework
/Versions/2.7/lib/python2.7/site-packages/numpy/ma/core.py:777:
RuntimeWarning: invalid value encountered in absolute
   return umath.absolute(a) * self.tolerance >= umath.absolute(b)
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pack
ages/numpy/ma/core.py:3791: UserWarning: Warning: converting a masked
element to nan.
   warnings.warn("Warning: converting a masked element to nan.")
.........................................../Library/Frameworks/Python.fra
mework/Versions/2.7/lib/python2.7/site-packages/matplotlib/gridspec.py:29
8: UserWarning: This figure includes Axes that are not compatible with
tight_layout, so its results might be incorrect.
   warnings.warn("This figure includes Axes that are not "
............................................/Library/Frameworks/Python.fr
amework/Versions/2.7/lib/python2.7/site-packages/numpy/testing/utils.py:8
07: RuntimeWarning: invalid value encountered in absolute
   z = abs(x-y)
........E
======================================================================
ERROR: matplotlib.tests.test_backend_pgf.test_pathclip
----------------------------------------------------------------------
Traceback (most recent call last):
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/nose/case.py", line 197, in runTest
     self.test(*self.arg)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/tests/test_backend_pgf.py", line 45, in backend_switcher
     result = func(*args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/tests/test_backend_pgf.py", line 146, in test_pathclip
     plt.savefig(os.path.join(result_dir, "pgf_pathclip.pdf"))
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/pyplot.py", line 561, in savefig
     return fig.savefig(*args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/figure.py", line 1410, in savefig
     self.canvas.print_figure(*args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backend_bases.py", line 2220, in print_figure
     **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 865, in print_pdf
     self._print_pdf_to_fh(fh, *args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 823, in _print_pdf_to_fh
     self.print_pgf(fname_pgf, *args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 805, in print_pgf
     self._print_pgf_to_fh(fh, *args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 785, in _print_pgf_to_fh
     RendererPgf(self.figure, fh),
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 409, in __init__
     self.latexManager = LatexManagerFactory.get_latex_manager()
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 223, in get_latex_manager
     new_inst = LatexManager()
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 309, in __init__
     raise LatexError("LaTeX returned an error, probably missing font or
error in preamble:\n%s" % stdout)
LatexError: LaTeX returned an error, probably missing font or error in
preamble:
This is XeTeX, Version 3.1415926-2.4-0.9998 (TeX Live 2012)
  restricted \write18 enabled.
**entering extended mode
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang,
nohyphenation, ge
rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek,
ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian,
czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi,
finnis
h, french, friulan, galician, german, ngerman, swissgerman, monogreek,
greek, h
ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada,
malayalam, ma
rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish,
italian,
kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal,
nynorsk,
  polish, portuguese, romanian, romansh, russian, sanskrit, serbian,
serbianc, s
lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian,
uppersorbian,
welsh, loaded.

*(/usr/local/texlive/2012/texmf-dist/tex/latex/base/minimal.cls
Document Class: minimal 2001/05/25 Standard LaTeX minimal class
)
(Please type a command or say `\end')
*
*(/usr/local/texlive/2012/texmf-dist/tex/latex/fontspec/fontspec.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/expl3.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3names.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3bootstrap.sty))
(/usr/local/texlive/2012/texmf-dist/tex/latex/etex-pkg/etex.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/color.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/local/texlive/2012/texmf-dist/tex/xelatex/xetex-def/xetex.def))
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/graphics.cfg))
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3basics.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3expan.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3tl.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3seq.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3int.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3quark.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3prg.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3clist.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3token.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3prop.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3msg.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3file.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3skip.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3keys.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3fp.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3box.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3coffins.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3color.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3luatex.sty))
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3packages/xparse/xparse.st
y)
(/usr/local/texlive/2012/texmf-dist/tex/latex/fontspec/fontspec-patches.s
ty
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/fixltx2e.sty)
*************************************************
* LaTeX warning: "xparse/redefine-command"
*
* Redefining document command \oldstylenums with arg. spec. 'm' on line
107.
*************************************************
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/fontenc.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/euenc/eu1enc.def)
(/usr/local/texlive/2012/texmf-dist/tex/latex/euenc/eu1lmr.fd))
(/usr/local/texlive/2012/texmf-dist/tex/xelatex/xunicode/xunicode.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/tipa/t3enc.def
(/usr/local/texlive/2012/texmf-dist/tex/latex/euenc/eu1lmss.fd))
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/keyval.sty)))
(/usr/local/texlive/2012/texmf-dist/tex/latex/fontspec/fontspec.cfg)))

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!
! fontspec error: "font-not-found"
!
! The font "Bitstream Vera Serif" cannot be found.
!
! See the fontspec documentation for further information.
!
! For immediate help type H <return>.
!...............................................
<*> \setmainfont{Bitstream Vera Serif} No pages of output. 
Transcript written on texput.log.


======================================================================
ERROR: matplotlib.tests.test_backend_pgf.test_mixedmode
----------------------------------------------------------------------
Traceback (most recent call last):
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/nose/case.py", line 197, in runTest
     self.test(*self.arg)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/tests/test_backend_pgf.py", line 45, in backend_switcher
     result = func(*args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/tests/test_backend_pgf.py", line 158, in test_mixedmode
     compare_figure('pgf_mixedmode.pdf')
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/tests/test_backend_pgf.py", line 56, in compare_figure
     plt.savefig(actual)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/pyplot.py", line 561, in savefig
     return fig.savefig(*args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/figure.py", line 1410, in savefig
     self.canvas.print_figure(*args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backend_bases.py", line 2220, in print_figure
     **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 865, in print_pdf
     self._print_pdf_to_fh(fh, *args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 823, in _print_pdf_to_fh
     self.print_pgf(fname_pgf, *args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 805, in print_pgf
     self._print_pgf_to_fh(fh, *args, **kwargs)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 785, in _print_pgf_to_fh
     RendererPgf(self.figure, fh),
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 409, in __init__
     self.latexManager = LatexManagerFactory.get_latex_manager()
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 223, in get_latex_manager
     new_inst = LatexManager()
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/backends/backend_pgf.py", line 309, in __init__
     raise LatexError("LaTeX returned an error, probably missing font or
error in preamble:\n%s" % stdout)
LatexError: LaTeX returned an error, probably missing font or error in
preamble:
This is XeTeX, Version 3.1415926-2.4-0.9998 (TeX Live 2012)
  restricted \write18 enabled.
**entering extended mode
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang,
nohyphenation, ge
rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek,
ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian,
czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi,
finnis
h, french, friulan, galician, german, ngerman, swissgerman, monogreek,
greek, h
ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada,
malayalam, ma
rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish,
italian,
kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal,
nynorsk,
  polish, portuguese, romanian, romansh, russian, sanskrit, serbian,
serbianc, s
lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian,
uppersorbian,
welsh, loaded.

*(/usr/local/texlive/2012/texmf-dist/tex/latex/base/minimal.cls
Document Class: minimal 2001/05/25 Standard LaTeX minimal class
)
(Please type a command or say `\end')
*
*(/usr/local/texlive/2012/texmf-dist/tex/latex/fontspec/fontspec.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/expl3.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3names.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3bootstrap.sty))
(/usr/local/texlive/2012/texmf-dist/tex/latex/etex-pkg/etex.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/color.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/local/texlive/2012/texmf-dist/tex/xelatex/xetex-def/xetex.def))
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/graphics.cfg))
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3basics.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3expan.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3tl.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3seq.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3int.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3quark.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3prg.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3clist.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3token.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3prop.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3msg.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3file.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3skip.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3keys.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3fp.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3box.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3coffins.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3color.sty)
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3kernel/l3luatex.sty))
(/usr/local/texlive/2012/texmf-dist/tex/latex/l3packages/xparse/xparse.st
y)
(/usr/local/texlive/2012/texmf-dist/tex/latex/fontspec/fontspec-patches.s
ty
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/fixltx2e.sty)
*************************************************
* LaTeX warning: "xparse/redefine-command"
*
* Redefining document command \oldstylenums with arg. spec. 'm' on line
107.
*************************************************
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/fontenc.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/euenc/eu1enc.def)
(/usr/local/texlive/2012/texmf-dist/tex/latex/euenc/eu1lmr.fd))
(/usr/local/texlive/2012/texmf-dist/tex/xelatex/xunicode/xunicode.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/tipa/t3enc.def
(/usr/local/texlive/2012/texmf-dist/tex/latex/euenc/eu1lmss.fd))
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/keyval.sty)))
(/usr/local/texlive/2012/texmf-dist/tex/latex/fontspec/fontspec.cfg)))

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!
! fontspec error: "font-not-found"
!
! The font "Bitstream Vera Serif" cannot be found.
!
! See the fontspec documentation for further information.
!
! For immediate help type H <return>.
!...............................................
<*> \setmainfont{Bitstream Vera Serif} No pages of output. 
Transcript written on texput.log.


======================================================================
ERROR: Failure: NameError (name 'pep8' is not defined)
----------------------------------------------------------------------
Traceback (most recent call last):
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/nose/loader.py", line 379, in loadTestsFromName
     module = resolve_name(addr.module)
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/nose/util.py", line 321, in resolve_name
     module = __import__('.'.join(parts_copy))
   File
"/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pac
kages/matplotlib/tests/test_coding_standards.py", line 18, in <module>
     class StandardReportWithExclusions(pep8.StandardReport):
NameError: name 'pep8' is not defined

----------------------------------------------------------------------
Ran 1458 tests in 699.485s

FAILED (KNOWNFAIL=2, errors=3)
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-pack
ages/matplotlib/__init__.py:1141: UserWarning:  This call to
matplotlib.use() has no effect
because the the backend has already been chosen;
matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.

   warnings.warn(_use_error_msg)
localhost$


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