Hi,
The output from using debug-annoying is attached. It all looks
relatively normal to me, but perhaps you will see something I don't. I
am thinking that the problem is the difference between Bitstream Serif
and the STIX fonts - they are just different. Perhaps you can suggest a
way to change say the fontfamilies that will make them agree.
Thanks,
David
--
**********************************
David M. Kaplan
Charge de Recherche 1
Institut de Recherche pour le Developpement
Centre de Recherche Halieutique Mediterraneenne et Tropicale
av. Jean Monnet
B.P. 171
34203 Sete cedex
France
Phone: +33 (0)4 99 57 32 27
Fax: +33 (0)4 99 57 32 95
http://www.ur097.ird.fr/team/dkaplan/index.html
**********************************
b$ ipython -pylab
matplotlib data path /usr/share/matplotlib/mpl-data
loaded rc file /home/dmk/.matplotlib/matplotlibrc
matplotlib version 0.98.1
verbose.level debug-annoying
interactive is False
units is False
platform is linux2
loaded modules: ['numpy.core.info', 'IPython.iplib', 'ctypes.os',
'matplotlib.tempfile', 'distutils.sysconfig', 'IPython.ConfigLoader',
'numpy.fft.types', 'numpy.ma.operator', 'pprint', 'numpy.core.umath',
'numpy.testing.operator', 'matplotlib.matplotlib', 'string',
'matplotlib.locale', 'numpy.lib.arraysetops', 'encodings.utf_8',
'IPython.Debugger', 'cmd', 'numpy.ma.extras', 'numpy.fft.fftpack_lite',
'shlex', 'IPython.excolors', 'dis', 'zlib', 'numpy.numpy', 'IPython.path',
'IPython.types', 'compiler.struct', 'numpy.lib.sys', 'pytz.datetime',
'numpy.ma.itertools', 'StringIO', 'numpy.imp', 'bdb', 'matplotlib.sys',
'numpy.lib._compiled_base', 'new', 'encodings.aliases', 'compiler.imp',
'_ctypes', 'numpy.fft.numpy', 'fnmatch', 'numpy.testing', 'codecs', 'path',
'numpy.os', 'numpy.testing.difflib', 'matplotlib.sre_constants',
'matplotlib.os', 'numpy.lib.ufunclike', 'pkg_resources', 'weakref',
'numpy.core._internal', 'IPython.tokenize', 'distutils.sys', 'base64',
'IPython.Release', '_sre', 'matplotlib.re', 'IPython', 'ctypes._ctypes',
'_heapq', 'numpy.lib.financial', 'binascii', 'IPython.sys', 'IPython.genutils',
'tokenize', 'numpy.core.numpy', 'pytz.pkg_resources', 'cPickle',
'IPython.macro', 'numpy.testing.info', 'numpy.lib.types', 'IPython.string',
'matplotlib.pyparsing', 'numpy.core.fromnumeric', 'numpy.ctypeslib',
'compiler.dis', 'IPython.platutils_dummy', 'exceptions', 'sre_parse',
'enthought.plugins', 'xml.sax.types', 'numpy.lib.polynomial', 'numpy.glob',
'IPython.ipstruct', 'IPython.inspect', 'compiler.pyassem',
'numpy.core.records', 'strop', 'numpy.core.numeric', 'IPython.shutil',
'IPython.Logger', 'numpy.lib.utils', 'compiler.types',
'numpy.core.__builtin__', 'codeop', 'types', 'IPython.DPyGetOpt',
'compiler.symbols', 'numpy.lib.inspect', 'numpy.lib.getlimits',
'numpy.core.numerictypes', 'distutils.dep_util', 'numpy.ma.cPickle',
'tempfile', 'imp', 'IPython.pdb', 'numpy.lib.gzip', 'IPython.rlineimpl',
'numpy.core.scalarmath', 'numpy.linalg.info', 'matplotlib.__future__',
'IPython.thread', 'IPython.Itpl', 'compiler.token', 'numpy.core.os', 'httplib',
'numpy.lib._datasource', 'token', 'IPython.new', 'cStringIO',
'matplotlib.StringIO', 'IPython.platutils_posix', 'numpy.add_newdocs',
'IPython.commands', 'encodings', 'IPython.threading', 'pytz.pytz',
'numpy.lib.numpy', 're', 'math', 'numpy.ma.warnings', 'IPython.Queue',
'numpy.lib.warnings', 'ctypes.struct', 'numpy.core.sys', 'md5', '_locale',
'thread', 'IPython.StringIO', 'traceback', 'errno', 'IPython.traceback',
'numpy.lib.bz2', 'matplotlib.copy', 'compiler.cStringIO',
'matplotlib.traceback', 'IPython.Shell', 'xml.sax.sys', 'numpy.random',
'numpy.linalg.numpy', 'numpy.lib.twodim_base', 'distutils.util',
'IPython.warnings', 'ctypes.sys', 'matplotlib.datetime', 'posixpath',
'IPython.re', 'numpy.core.arrayprint', 'compiler.os', 'matplotlib.md5',
'IPython.getopt', 'IPython.token', 'numpy.lib.scimath', 'xml.sax.os',
'_codecs', 'numpy.__config__', 'numpy.ma.numpy', 'copy', 'matplotlib.dateutil',
'hashlib', 'keyword', 'IPython.linecache', 'posix', 'numpy.core.ctypes',
'IPython.OutputTrap', 'sre_compile', '_hashlib', 'IPython.PyColorize',
'numpy.lib.shape_base', 'numpy._import_tools', '__main__', 'numpy.fft.info',
'numpy.sys', 'bz2', 'IPython.bisect', 'numpy.testing.parametric',
'encodings.codecs', 'IPython.readline', 'compiler.new',
'numpy.lib.index_tricks', 'warnings', 'glob', 'IPython.ColorANSI',
'numpy.lib.os', 'matplotlib.cbook', 'numpy.lib.tempfile', 'compiler.future',
'xml.sax.codecs', 'numpy.lib.cStringIO', 'numpy.linalg.linalg',
'numpy.ma.types', 'numpy.testing.shlex', 'random', 'heapq', 'datetime',
'IPython.bdb', 'ctypes._endian', 'encodings.encodings', 'pytz.cStringIO',
'IPython.time', 'numpy.random.mtrand', 'xml', 'numpy.linalg',
'IPython.OInspect', 'cProfile', 'IPython.cStringIO', 'numpy.ma.sys',
'numpy.lib.math', 'repr', 'pytz.tzinfo', 'numpy.testing.re', 'numpy.version',
'distutils.re', '_lsprof', 'IPython.os', 'compiler', 'numpy.lib.type_check',
'resource', 'bisect', 'IPython.glob', 'compiler.consts', 'pydoc', 'threading',
'IPython.ctypes', 'matplotlib.pytz', 'numpy.fft.helper', 'pytz.tzfile',
'locale', 'compiler.transformer', 'xml.sax.saxutils', 'compiler.parser',
'compiler.symbol', 'dateutil', 'enthought', 'matplotlib.warnings',
'matplotlib.string', 'urllib', 'numpy.core.mmap', 'IPython.__main__',
'numpy.lib.struct', 'fcntl', 'distutils.os', 'Queue', 'numpy.lib.info',
'ctypes', 'matplotlib', 'numpy.testing.sys', 'numpy.core._sort', 'pickleshare',
'IPython.hooks', 'commands', 'numpy.lib.shutil', 'IPython.socket', 'itertools',
'numpy.fft.fftpack', 'opcode', 'pdb', 'numpy.core.string', 'unittest',
'IPython.codeop', 'pkgutil', 'numpy.testing.types', 'numpy.lib.compiler',
'sre_constants', 'numpy', 'IPython.strdispatch', 'matplotlib.xml', 'numpy.ma',
'IPython.IPython', 'pytz', 'numpy.testing.os', 'IPython.resource', 'numpy.lib',
'apport_python_hook', 'pytz.bisect', 'distutils.distutils', 'copy_reg',
'numpy.testing.glob', 'site', 'IPython.cProfile', 'numpy.lib.time', 'shutil',
'numpy.lib.cPickle', 'numpy.testing.traceback', 'compiler.pycodegen',
'compiler.misc', 'numpy.ctypes', 'numpy.core', 'matplotlib.rcsetup',
'pytz.sets', 'IPython.wildcard', 'numpy.testing.utils', 'rfc822',
'numpy.core.types', 'sys', 'IPython.ipmaker', 'IPython.background_jobs',
'numpy.lib.pprint', 'matplotlib.fontconfig_pattern', '_weakref',
'numpy.testing.numpytest', 'difflib', 'distutils.errors', 'urlparse', 'sets',
'gzip', 'numpy.lib.machar', 'IPython.ipapi', 'numpy.testing.numpy',
'IPython.pickleshare', '_bisect', 'xml.sax.urlparse', 'distutils',
'IPython.signal', 'matplotlib.errno', 'IPython.Prompts', 'enthought.traits',
'matplotlib.colors', 'struct', 'numpy.random.info', 'mmap', 'xml.sax.urllib',
'IPython.copy_reg', 'compiler.sys', 'collections', 'IPython.pydoc',
'numpy.lib.pkgutil', 'pytz.os', 'compiler.ast', 'zipimport', 'IPython.Magic',
'numpy.testing.unittest', 'IPython.imp', 'textwrap', 'numpy.lib.re', 'signal',
'numpy.lib.io', 'IPython.shlex', 'numpy.core.multiarray', 'IPython.exceptions',
'distutils.log', 'numpy.ma.core', '_ssl', 'IPython.deep_reload',
'matplotlib.numpy', 'IPython.platutils_win32', 'UserDict', 'inspect',
'compiler.visitor', 'numpy.__builtin__', 'socket', 'IPython.cmd',
'numpy.core.memmap', 'numpy.testing.warnings', 'numpy.testing.imp',
'numpy.linalg.lapack_lite', 'os', 'marshal', 'IPython.FakeModule',
'__future__', 'enthought.traits.ui', '__builtin__', 'xml.sax.xmlreader',
'numpy.core.cPickle', 'operator', 'os.path', 'distutils.string',
'IPython.usage', '_socket', 'xml.sax.handler', 'pytz.sys',
'numpy.core.defmatrix', 'compiler.compiler', 'IPython.platutils',
'IPython.keyword', 'pwd', 'sitecustomize', 'compiler.copy_reg',
'IPython.__builtin__', 'numpy.core.re', '_struct', '_types',
'numpy.lib.urlparse', 'numpy.fft', 'numpy.random.numpy',
'numpy.lib.function_base', 'IPython.ultraTB', 'IPython.tempfile', 'mimetools',
'xml.sax', '_random', 'parser', 'IPython.sets', 'pytz.struct',
'numpy.core._dotblas', 'matplotlib.weakref', 'IPython.pprint',
'numpy.lib.pydoc', 'numpy.lib.urllib2', 'linecache', 'IPython.textwrap',
'numpy.core.defchararray', 'gettext', 'getopt', 'matplotlib.time',
'xml.sax._exceptions', 'stat', 'encodings.types', 'symbol', 'urllib2',
'numpy.core.warnings', 'ctypes.ctypes', 'numpy.lib.format', 'readline',
'pytz.gettext', 'IPython.cPickle', 'distutils.spawn', 'matplotlib.distutils',
'matplotlib.shutil', 'time', 'compiler.marshal', 'compiler.syntax']
$HOME=/home/dmk
CONFIGDIR=/home/dmk/.matplotlib
Using fontManager instance from /home/dmk/.matplotlib/fontManager.cache
numerix numpy 1.1.0
backend Agg version v2.2
Activating auto-logging. Current session state plus future input saved.
Filename : ipython_log.py
Mode : append
Output logging : False
Raw input log : False
Timestamping : False
State : active
WARNING: File startup.py not found. Skipping it.
Python 2.5.2 (r252:60911, Apr 21 2008, 11:12:42)
Type "copyright", "credits" or "license" for more information.
IPython 0.8.1 -- An enhanced Interactive Python.
? -> Introduction to IPython's features.
%magic -> Information about IPython's 'magic' % functions.
help -> Python's own help system.
object? -> Details about 'object'. ?object also works, ?? prints more.
Welcome to pylab, a matplotlib-based Python environment.
For more information, type 'help(pylab)'.
In [1]: plot(arange(10))
backend_agg.new_figure_manager
Out[1]: [<matplotlib.lines.Line2D object at 0x8d51bcc>]
In [2]: text(1,3,r'$1 \alpha$' )
Out[2]: <matplotlib.text.Text object at 0x8c7d52c>
In [3]: text(1,7,r'1 \alpha' )
Out[3]: <matplotlib.text.Text object at 0x8d51f6c>
In [4]: savefig('test.eps')
findfont found Bitstream Vera Serif, normal, normal 400, normal, 12.0
findfont returning /usr/share/fonts/truetype/ttf-bitstream-vera/VeraSe.ttf
findfont found Bitstream Vera Serif, normal, normal 400, normal, 12.0
findfont returning /usr/share/fonts/truetype/ttf-bitstream-vera/VeraSe.ttf
findfont found Bitstream Vera Serif, normal, normal 400, normal, 12.0
findfont returning /usr/share/fonts/truetype/ttf-bitstream-vera/VeraSe.ttf
findfont found STIXGeneral, normal, normal 400, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXGeneral.ttf
findfont found STIXNonUnicode, normal, normal 700, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXNonUniBol.ttf
findfont found STIXGeneral, normal, normal 700, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXGeneralBol.ttf
findfont found STIXSize3, normal, normal 400, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXSiz3Sym.ttf
findfont found STIXSize4, normal, normal 400, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXSiz4Sym.ttf
findfont found STIXSize5, normal, normal 400, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXSiz5Sym.ttf
findfont found STIXSize1, normal, normal 400, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXSiz1Sym.ttf
findfont found STIXSize2, normal, normal 400, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXSiz2Sym.ttf
findfont found STIXGeneral, italic, normal 400, normal, 12.0
findfont returning
/usr/share/matplotlib/mpl-data/fonts/ttf/STIXGeneralItalic.ttf
findfont found STIXNonUnicode, italic, normal 400, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXNonUniIta.ttf
findfont cached STIXGeneral, normal, normal, 400, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXGeneral.ttf
findfont found STIXNonUnicode, normal, normal 400, normal, 12.0
findfont returning /usr/share/matplotlib/mpl-data/fonts/ttf/STIXNonUni.ttf
In [5]: draw()
FigureCanvasAgg.draw
RendererAgg.__init__
RendererAgg.__init__ width=640.0, height=480.0
RendererAgg.__init__ _RendererAgg done
RendererAgg.__init__ done
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
findfont found Bitstream Vera Serif, normal, normal 400, normal, 12.0
findfont returning /usr/share/fonts/truetype/ttf-bitstream-vera/VeraSe.ttf
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg.points_to_pixels
RendererAgg.points_to_pixels
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg._get_agg_font
findfont found Bitstream Vera Serif, normal, normal 400, normal, 12.0
findfont returning /usr/share/fonts/truetype/ttf-bitstream-vera/VeraSe.ttf
RendererAgg.draw_text
RendererAgg.draw_mathtext
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg._get_agg_font
RendererAgg._get_agg_font
RendererAgg.draw_text
RendererAgg.draw_mathtext
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