Can you be more specific about what is going wrong?  The zoom magnifier 
seems to work fine for me with or without twinx, but perhaps we just 
have different expectations of how it works.  Could you perhaps provide 
screenshots?

Response>>
I confirmed it is 0.90.0 (I am running on Windows)
attached is code (which is simply example packaged with matplot lib)

ALSO: 

the default figure: of which I selected the region from 2-4 on the x-axis
for magnifying
the resulting figure from magnifying:  you can see much of the content from
2-4 is missing (I selected the entire y axis with the magnifier) -- the
xaxis is only selecting a subset of the range I chose
the expected figure:  I used the crossed arrows instead of the magnifier to
create a plot figure that roughly mimics what I expected... I expected to
see all data in y from x = 2 to 4

Is my expectation wrong? I expect the x and y axis range selected by the
magnifier tool to be fully represented in the subsequent representation of
the data - it always seems to be subset of the data range chosen.

http://www.nabble.com/file/p20334562/two_scales.py two_scales.py 
http://www.nabble.com/file/p20334562/two_scales_baseline.png
two_scales_baseline.png 
http://www.nabble.com/file/p20334562/two_scales_2to4_concern.png
two_scales_2to4_concern.png 
http://www.nabble.com/file/p20334562/two_scales_2to4_expectation.png
two_scales_2to4_expectation.png 
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