Dear colleagues,
I'm trying to display an histogram with logarithmic bins using the
logarithmic scale in the x-axis. When I execute the attached python
script it crashes giving a "Bus Error" message (see also the attached
core dump).
If I remove the line "plt.xscale('log')" the script goes up to the end.
I'm running the program on MacOS 10.6.8, Python 2.5, numpy 1.2.1, and
matplotlib 0.98.5.2.
Anyone knows the reason of the crash?
Thanks,
marc
Process: Python [12279]
Path:
/Library/Frameworks/Python.framework/Versions/2.5/Resources/Python.app/Contents/MacOS/Python
Identifier: org.python.python
Version: 2.5a0 (2.5alpha0)
Code Type: X86 (Native)
Parent Process: bash [11351]
Date/Time: 2011-08-10 19:29:03.082 +0200
OS Version: Mac OS X 10.6.8 (10K549)
Report Version: 6
Interval Since Last Report: 1008 sec
Crashes Since Last Report: 3
Per-App Interval Since Last Report: 33 sec
Per-App Crashes Since Last Report: 3
Anonymous UUID: 22EFEEEE-1C96-47F9-BECD-21497E29C337
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Thread 0 Crashed: Dispatch queue: com.apple.main-thread
0 ??? 0000000000 0 + 0
1 libSystem.B.dylib 0x9a9c8f68
_Unwind_GetLanguageSpecificData + 24
2 libstdc++.6.dylib 0x948fcd86 __gxx_personality_v0 + 120
3 libgcc_s.1.dylib 0x01759476
_Unwind_RaiseException_Phase2 + 102 (unwind.inc:68)
4 libgcc_s.1.dylib 0x01759890 _Unwind_Resume + 112
(unwind.inc:238)
5 _backend_agg.so 0x02a344c0
py_to_agg_transformation_matrix(Py::Object const&, bool) + 580
6 _backend_agg.so 0x02a3c5a5
RendererAgg::draw_path(Py::Tuple const&) + 281
7 _backend_agg.so 0x02a4daea
Py::PythonExtension<RendererAgg>::method_varargs_call_handler(_object*,
_object*) + 400
8 org.python.python 0x0009761c PyEval_EvalFrameEx + 18969
(ceval.c:3566)
9 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
10 org.python.python 0x00097108 PyEval_EvalFrameEx + 17669
(ceval.c:3662)
11 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
12 org.python.python 0x00097108 PyEval_EvalFrameEx + 17669
(ceval.c:3662)
13 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
14 org.python.python 0x00097108 PyEval_EvalFrameEx + 17669
(ceval.c:3662)
15 org.python.python 0x000982e4 PyEval_EvalFrameEx + 22241
(ceval.c:3652)
16 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
17 org.python.python 0x0002edfb function_call + 320
(funcobject.c:517)
18 org.python.python 0x0000dceb PyObject_Call + 45
(abstract.c:1860)
19 org.python.python 0x0001580c instancemethod_call + 401
(classobject.c:2493)
20 org.python.python 0x0000dceb PyObject_Call + 45
(abstract.c:1860)
21 org.python.python 0x0009594d PyEval_EvalFrameEx + 11594
(ceval.c:3777)
22 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
23 org.python.python 0x00097108 PyEval_EvalFrameEx + 17669
(ceval.c:3662)
24 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
25 org.python.python 0x0002edfb function_call + 320
(funcobject.c:517)
26 org.python.python 0x0000dceb PyObject_Call + 45
(abstract.c:1860)
27 org.python.python 0x000965d4 PyEval_EvalFrameEx + 14801
(ceval.c:3846)
28 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
29 org.python.python 0x0002edfb function_call + 320
(funcobject.c:517)
30 org.python.python 0x0000dceb PyObject_Call + 45
(abstract.c:1860)
31 org.python.python 0x0001580c instancemethod_call + 401
(classobject.c:2493)
32 org.python.python 0x0000dceb PyObject_Call + 45
(abstract.c:1860)
33 org.python.python 0x00091d7e
PyEval_CallObjectWithKeywords + 112 (ceval.c:3435)
34 _tkinter.so 0x024dfe57 PythonCmd + 220
(_tkinter.c:2012)
35 Tcl 0x02663f78 TclInvokeStringCommand + 110
36 Tcl 0x02666182 TclEvalObjvInternal + 984
37 Tcl 0x0268d68f TclExecuteByteCode + 3487
38 Tcl 0x02692f10 Tcl_ExprObj + 1090
39 Tcl 0x02664d35 Tcl_ExprBooleanObj + 46
40 Tcl 0x02672ca7 Tcl_IfObjCmd + 147
41 Tcl 0x02666182 TclEvalObjvInternal + 984
42 Tcl 0x0266674f EvalEx + 1083
43 Tk 0x0270f808 Tk_BindEvent + 5042
44 Tk 0x02712d6f TkBindEventProc + 295
45 Tk 0x02719d2e Tk_HandleEvent + 1384
46 Tk 0x027338d7 TkDoConfigureNotify + 136
47 Tk 0x02733fa5 Tk_MakeWindowExist + 341
48 Tk 0x02733feb Tk_MapWindow + 64
49 Tk 0x0272bcde ArrangePacking + 1720
50 Tcl 0x026c2f9c TclServiceIdle + 61
51 Tcl 0x026b111e Tcl_DoOneEvent + 342
52 _tkinter.so 0x024df74b Tkapp_MainLoop + 408
(_tkinter.c:2545)
53 org.python.python 0x0009761c PyEval_EvalFrameEx + 18969
(ceval.c:3566)
54 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
55 org.python.python 0x00097108 PyEval_EvalFrameEx + 17669
(ceval.c:3662)
56 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
57 org.python.python 0x00097108 PyEval_EvalFrameEx + 17669
(ceval.c:3662)
58 org.python.python 0x00099482 PyEval_EvalCodeEx + 1819
(ceval.c:2833)
59 org.python.python 0x00099636 PyEval_EvalCode + 87
(ceval.c:500)
60 org.python.python 0x000bc5e9 PyRun_FileExFlags + 264
(pythonrun.c:1264)
61 org.python.python 0x000bc9aa PyRun_SimpleFileExFlags +
640 (pythonrun.c:870)
62 org.python.python 0x000c9fe4 Py_Main + 2915 (main.c:496)
63 org.python.python 0x00001f4e 0x1000 + 3918
64 org.python.python 0x00001e69 0x1000 + 3689
Thread 1: Dispatch queue: com.apple.libdispatch-manager
0 libSystem.B.dylib 0x9a980382 kevent + 10
1 libSystem.B.dylib 0x9a980a9c _dispatch_mgr_invoke + 215
2 libSystem.B.dylib 0x9a97ff59 _dispatch_queue_invoke + 163
3 libSystem.B.dylib 0x9a97fcfe _dispatch_worker_thread2 +
240
4 libSystem.B.dylib 0x9a97f781 _pthread_wqthread + 390
5 libSystem.B.dylib 0x9a97f5c6 start_wqthread + 30
Thread 2:
0 libSystem.B.dylib 0x9a97f412 __workq_kernreturn + 10
1 libSystem.B.dylib 0x9a97f9a8 _pthread_wqthread + 941
2 libSystem.B.dylib 0x9a97f5c6 start_wqthread + 30
Thread 3:
0 libSystem.B.dylib 0x9a978ac6 select$DARWIN_EXTSN + 10
1 Tcl 0x026d619e NotifierThreadProc + 502
2 libSystem.B.dylib 0x9a987259 _pthread_start + 345
3 libSystem.B.dylib 0x9a9870de thread_start + 34
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xbfffaaf4 ebx: 0x474e5543 ecx: 0x432b2b00 edx: 0xbfffabf4
edi: 0xbfffaaf4 esi: 0xbfffa8d8 ebp: 0xbfffa8b8 esp: 0xbfffa89c
ss: 0x0000001f efl: 0x00010286 eip: 0x00000000 cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
cr2: 0x00000000
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0xffff0000 - 0xffff1fff libSystem.B.dylib ??? (???)
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Model: MacBook5,2, BootROM MB52.0088.B05, 2 processors, Intel Core 2 Duo, 2
GHz, 4 GB, SMC 1.38f5
Graphics: NVIDIA GeForce 9400M, NVIDIA GeForce 9400M, PCI, 256 MB
Memory Module: global_name
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8E), Broadcom
BCM43xx 1.0 (5.10.131.42.4)
Bluetooth: Version 2.4.5f3, 2 service, 12 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Serial ATA Device: Hitachi HTS543216L9SA02, 149.05 GB
Serial ATA Device: MATSHITADVD-R UJ867A
USB Device: Built-in iSight, 0x05ac (Apple Inc.), 0x8501, 0x24400000 / 2
USB Device: Apple Internal Keyboard / Trackpad, 0x05ac (Apple Inc.), 0x0229,
0x04600000 / 3
USB Device: IR Receiver, 0x05ac (Apple Inc.), 0x8242, 0x04500000 / 2
USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x06100000 / 2
USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8215,
0x06110000 / 5
import matplotlib.pyplot as plt
import numpy as np
data = 10**np.random.uniform(0,30,10000)
plt.hist(data,bins=10**np.linspace(0, 30, 100))
plt.xscale('log')
plt.show()
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