Hi All,
I am trying to plot time against mean daily temperature values. The problem
is temperature contains no data in a few areas. I want to be able to ignore
this and continue plotting.
When I run the below script on my data that has all normal numbers it works
fine but when I run the script on my data that has sections of 'no data' I
receive the below error and the graph will not plot the trendline. Any
suggestions on how I could fix this.
Thanks
*Warning (from warnings module):
File "C:\Python27\lib\site-packages\numpy\ma\core.py", line 3785
warnings.warn("Warning: converting a masked element to nan.")
UserWarning: Warning: converting a masked element to nan.*
from netCDF4 import Dataset
import matplotlib.pyplot as plt
import numpy as N
from mpl_toolkits.basemap import Basemap
from netcdftime import utime
from datetime import datetime
import os
from numpy import *
import matplotlib.dates as mdates
from numpy import ma as MA
TSFCmeanall=[]
timeall=[]
time_intall=[]
MainFolder=r"E:/GriddedData/T_SFC/1987/"
for (path, dirs, files) in os.walk(MainFolder):
for dir in dirs:
print dir
path=path+'/'
for ncfile in files:
if ncfile[-3:]=='.nc':
ncfile=os.path.join(path,ncfile)
ncfile=Dataset(ncfile, 'r+', 'NETCDF4')
TSFC=ncfile.variables['T_SFC'][0:20]
TIME=ncfile.variables['time'][0:20]
fillvalue=ncfile.variables['T_SFC']._FillValue
TSFC=MA.masked_values(TSFC, fillvalue)
ncfile.close()
for TSFC, TIME in
zip((TSFC[:]),(TIME[:])):
cdftime=utime('seconds since
1970-01-01 00:00:00')
ncfiletime=cdftime.num2date(TIME)
timestr=str(ncfiletime)
d = datetime.strptime(timestr,
'%Y-%m-%d %H:%M:%S')
date_string = d.strftime('%Y%m%d%H')
time_int=int(date_string)
TSFCmean=N.mean(TSFC)
TSFCmeanall.append(TSFCmean)
timeall.append(ncfiletime)
time_intall.append(time_int)
x=timeall
y=TSFCmeanall
x2=time_intall
fig, ax=plt.subplots(1)
z=N.polyfit(x2,y,1)
p=N.poly1d(z)
plt.plot(x,y)
plt.plot(x,p(x2),'r--') #add trendline to plot
fig.autofmt_xdate()
ax.fmt_xdata=mdates.DateFormatter('%Y-%m-%d %H:%M:%S')
plt.ylabel("Temperature C")
plt.title("Mean Daily Temp")
plt.show()
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