On Tue, Dec 16, 2008 at 09:27:37AM -0500, Steve Young wrote:
> Hi Michael,
> First I would try to submit some jobs just to the execution queue to
> make
> sure it works. I'm wondering since it says " job cannot be started - cannot
> set hostlist" that you have a list of machines in your server_priv/nodes
> file that lists "serial" as a feature to a certain amount of nodes for this
> queue. Another thing I wonder is what does the batch script for the job
> look like? Is the user using -l host=<name of node> in it? I'm not for
> certain what the message is supposed to mean but it sounds like it isn't
> able to find any nodes to allocate the job to. Hope this helps,
>
> -Steve
>
> On Dec 16, 2008, at 8:12 AM, Michael Galloway wrote:
>
queue is full:
echo "sleep 90"| qsub -q serial
qsub: Maximum number of jobs already in queue MSG=total number of jobs in queue
exceeds the queue limit: user m...@bioinfo, queue serial
i had set max_queuable in the queue config:
create queue serial
set queue serial queue_type = Execution
set queue serial max_queuable = 36
set queue serial resources_max.walltime = 168:00:00
set queue serial resources_default.neednodes = serial
set queue serial resources_default.nodes = 12
set queue serial resources_default.walltime = 168:00:00
set queue serial enabled = True
set queue serial started = True
and there are 36 in there:
[...@bioinfo ~]$ qstat -q
server: bioinfo
Queue Memory CPU Time Walltime Node Run Que Lm State
---------------- ------ -------- -------- ---- --- --- -- -----
annotate -- -- 18:00:00 -- 0 0 -- E R
sroute -- -- -- -- 0 8157 -- E R
md -- -- 168:00:0 -- 18 0 -- E R
serial -- -- 168:00:0 -- 0 36 -- E R
----- -----
18 8193
the jobs in the serial queue are runnable if i just run them manually with qrun.
-- michael
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