Although it took about 30 hours and ~8 GB memory it finally finished without errors. :)
Thanks for all the help. Morgan Aaron Darling wrote: > Sorry, looks like muscle_aed wasn't linked properly. I've updated the > file on the server, can you give it another try? > > http://gel.ahabs.wisc.edu/mauve/downloads/misc/progressiveMauve_2.0.0_linux_x64_ghostfix.tar.gz > > > -Aaron > > > Morgan Langille wrote: >> Thanks for the effort, but I still am getting errors: >> >> .... >> Adding unaligned intervals >> addUnalignedIntervals yields 20 intervals >> Merging unaligned intervals >> Marbling gaps >> Propagating descendant breakpoints >> descendant 0(5) has 1 intervals >> descendant 1(6) has 1 intervals >> propagateDescendantBreakpoints yields 9 intervals >> Creating ancestral ordering >> Previous anchoring score: 4.01897e+08, new anchor score: 4.0208e+08 >> Backing up alignment tree... >> propagating ancestral breakpoints >> recursive anchor search >> 0,0 has an additional 70 matches >> Restoring backed up alignment tree... >> 0,8 has 70 pairwise matches >> Performing Sum-of-pairs Greedy Breakpoint Elimination >> construct LCB tracking matches >> There are 2452 tracking matches >> There are 4904 / 66204 components used >> init tracking match LCB tracking >> pairwise score tracking matches >> get pairwise LCBs >> there are 74 pairwise LCBs >> Greedy BPE >> 1%..2%..4%..5%..6%..8%..9%.. >> 10%..12%..13%..14%..16%..17%..18%.. >> 20%..21%..22%..24%..25%..27%..28%..29%.. >> 31%..32%..33%..35%..36%..37%..39%.. >> 40%..41%..43%..44%..45%..done >> Arrived at 12 intervals >> Adding unaligned intervals >> addUnalignedIntervals yields 29 intervals >> Merging unaligned intervals >> Marbling gaps >> Propagating descendant breakpoints >> descendant 0(5) has 1 intervals >> descendant 1(6) has 1 intervals >> propagateDescendantBreakpoints yields 12 intervals >> Creating ancestral ordering >> Previous anchoring score: 4.0208e+08, new anchor score: 4.02005e+08 >> propagating ancestral breakpoints >> performing a gapped alignment >> >> 0%.../muscle_aed: error while loading shared libraries: libgomp.so.1: >> cannot open shared object file: No such file or directory -- Morgan Langille PhD Student, Brinkman Laboratory Department of Molecular Biology and Biochemistry Simon Fraser University, 8888 University Dr. Burnaby, BC, Canada V5A 1S6 Phone: 778-782-5414 Fax: 778-782-5583 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
