Hi ! Thanks in advance for the help through the mailing list !
I have two bacterial genomes I aligned using the files from the genbank FTP. Then I have about 100 contigs that I align on the known genomes in order to retreive any variable sequences to design strain specific qRT-PCR primers. I have aligned everything properly, but now I would like to add the annotation to the alignment and also extract the sequences from these variable regions in order to work with them. I have no clue how to do both those things ! I run Mauve on my Mac and I also have access to a linux server box. Thanks in advance ! Regards, Mathieu McGill University
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