Hi. You aren't the first person to request a gui-less reorderer, and I intend to release a version fulfilling this request. However it isn't as simple as changing the way errors are reported, and will require some restructuring I haven't had the chance to tackle. Thanks for the reminder, and I will try and get this functionality released.
Thanks Anna Rissman ----- Original Message ----- From: Nick Loman <n.j.lo...@bham.ac.uk> Date: Thursday, December 16, 2010 11:48 am Subject: [Mauve-users] Running mauve in headless mode To: mauve-users@lists.sourceforge.net > Hi there, > > Thanks alot for Mauve, it is fantastic. > > I need to run Mauve from the command-line, including the contig > ordering > tool. It would be advantageous if I could run the contig ordering > tool > with Java in "headless" mode, i.e. with no X11 display set up. It > seems > the display is only used for things like popping up error messages, > which could instead be output to stderr. > > Hopefully this request can be accommodated. To test headless mode on > a > desktop machine you can use -Djava.awt.headless=true, e.g. > java -Djava.awt.headless=true -Xmx1000m -cp Mauve.jar > org.gel.mauve.contigs.ContigOrderer ... > > Thanks alot, > > Nick. > > > > > ------------------------------------------------------------------------------ > Lotusphere 2011 > Register now for Lotusphere 2011 and learn how > to connect the dots, take your collaborative environment > to the next level, and enter the era of Social Business. > http://p.sf.net/sfu/lotusphere-d2d > _______________________________________________ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mauve-users > ------------------------------------------------------------------------------ Lotusphere 2011 Register now for Lotusphere 2011 and learn how to connect the dots, take your collaborative environment to the next level, and enter the era of Social Business. http://p.sf.net/sfu/lotusphere-d2d _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
