We are trying to adapt Mauve locally to run in MPI parallel, hopefully will have some code to share in a month or so. Kat
----------- Dr Kathryn Holt Postdoctoral Research Fellow Dept Microbiology & Immunology University of Melbourne kh...@unimelb.edu.au +61 3 8344 5712 ------ Forwarded Message From: Kat Holt <k...@sanger.ac.uk> Date: Fri, 20 May 2011 05:47:07 +0100 To: Kathryn Holt <kh...@unimelb.edu.au> Subject: [Mauve-users] Parallel mauve (fwd) ---------- Forwarded message ---------- Date: Fri, 13 May 2011 09:10:42 +0100 From: Nick Loman <n.j.lo...@bham.ac.uk> To: "mauve-users@lists.sourceforge.net" <mauve-users@lists.sourceforge.net> Subject: [Mauve-users] Parallel mauve Hi all Is there a strategy for speeding Mauve up for large numbers of genomes? I understand that threaded mode is disabled in the most recent version. Is there any other strategy for running in parallel, either by splitting up the work, or MPI or similar? Cheers Nick ---------------------------------------------------------------------------- -- Achieve unprecedented app performance and reliability What every C/C++ and Fortran developer should know. Learn how Intel has extended the reach of its next-generation tools to help boost performance applications - inlcuding clusters. http://p.sf.net/sfu/intel-dev2devmay _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. ------ End of Forwarded Message ------------------------------------------------------------------------------ Simplify data backup and recovery for your virtual environment with vRanger. Installation's a snap, and flexible recovery options mean your data is safe, secure and there when you need it. Data protection magic? Nope - It's vRanger. Get your free trial download today. http://p.sf.net/sfu/quest-sfdev2dev _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
