Hi, I'm trying to get Mauve Contig Mover (MCM) to run from the command line using the following infrastructure and command:
Infrastructure: mauve_2.3.1 on an x86 64bit linux server (X11 enabled), accessed via an SSH client from a windows desktop. Command: java -Xmx500m -cp ~/bin/mauve_2.3.1/Mauve.jar org.gel.mauve.contigs.ContigOrderer -output 3kb_20_reordered -ref H063920004_ref_genome.gbk -draft 3kb_20_k41_final.scaffolds.fasta Initially there was an X11 error "No X11 DISPLAY variable was set, but this program performed an operation which requires it.". So I switched to a different SSH client that allows X11 forwarding and got "Can't connect to X11 window server using 'localhost:10.0' as the value of the DISPLAY variable." We solved this by installing Xming (a windows X server http://www.straightrunning.com/XmingNotes/) on the desktop PC and now MCM runs as expected. It looks like MCM is trying to initiate a graphical process even though it's run from the command line... So what's the problem?... We want to run MCM as part of a pipeline of tools served through an online interface. Requiring the integration of X servers on user desktops is obviously a show stopper. Questions: Should MCM be invoking a graphical component when run from the command line? Is there any way of preventing it? Thanks Steve Bioinformatics Health Protection Agency UK ----------------------------------------- ************************************************************************** The information contained in the EMail and any attachments is confidential and intended solely and for the attention and use of the named addressee(s). It may not be disclosed to any other person without the express authority of the HPA, or the intended recipient, or both. If you are not the intended recipient, you must not disclose, copy, distribute or retain this message or any part of it. This footnote also confirms that this EMail has been swept for computer viruses, but please re-sweep any attachments before opening or saving. HTTP://www.HPA.org.uk ************************************************************************** ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
