Hi Cristell, hope this info isn't too late to be useful.
On Thu, 2013-10-24 at 07:48 +1100, Cristell Navarro wrote: > Hi all > I would like to know how could I generate the .islands file and what is > the information that the file .bbcols is showing... > The .islands file is only generated by mauveAligner, and not by progressiveMauve. The .bbcols file records the alignment columns that are predicted to be part of larger conserved segments among each group of genomes. The first column is the block ID, counting from 0 in the order that blocks appear in the XMFA file. The 2nd column is the alignment column where a conserved segment begins within the block. The 3rd column is the length of the conserved region (in alignment columns). The 4th and successive columns record the genome IDs participating in the conserved block. These start at 0 and count up in the order that genomes were input to the aligner on the command-line. Hope that helps, -Aaron -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ Android is increasing in popularity, but the open development platform that developers love is also attractive to malware creators. Download this white paper to learn more about secure code signing practices that can help keep Android apps secure. http://pubads.g.doubleclick.net/gampad/clk?id=65839951&iu=/4140/ostg.clktrk _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
