Hi Tauqeer, This seems like a sensible thing to do but isn't possible with the current implementation of progressiveMauve. In fact I'm not aware of any genome aligners that support addition of new sequences to an existing alignment. Sounds like a nice feature to add to the wish list.
Best, -Aaron On Tue, 2014-01-07 at 10:24 +1100, Tauqeer Alam wrote: > Hi All > I have aligned 150 bacterial genomes using progressiveMauve, but later > realized that I also had to include 3 more genomes. How can I perform > profile alignment in progressiveMauve? Any help will be greatly > appreciated. > > Thanks > > Tauqeer > -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
