Hi Joe, On Thu, 2014-01-09 at 19:02 -0800, Joseph Fass wrote: > Is there any interest in adding read alignment browsing to mauve? I.e. > load BAM files for each reference, and view all the read alignments at > the same time, anchored and gapped according to the multiple alignment > between genomes? > I think this would be a great feature to have in Mauve, although it sounds like something that would require substantial effort for someone to implement.
> If not, is anyone aware of a tool that does this? > There has been some work on tools for aligning reads to multiple sequence alignments: http://bioinformatics.oxfordjournals.org/content/29/13/i361.full However I'm not aware of any software to visualize such alignments. Best, -Aaron -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ CenturyLink Cloud: The Leader in Enterprise Cloud Services. Learn Why More Businesses Are Choosing CenturyLink Cloud For Critical Workloads, Development Environments & Everything In Between. Get a Quote or Start a Free Trial Today. http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
